Strain Fitness in Pseudomonas sp. S08-1 around OH686_07845

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07840 and OH686_07845 overlap by 4 nucleotidesOH686_07845 and OH686_07850 overlap by 13 nucleotides OH686_07840: OH686_07840 - COG1683: Uncharacterized conserved protein /Hypothetical protein YbgA, at 1,604,182 to 1,605,132 _07840 OH686_07845: OH686_07845 - Transcriptional regulator, MerR family, associated with photolyase, at 1,605,129 to 1,606,055 _07845 OH686_07850: OH686_07850 - Deoxyribodipyrimidine photolyase , at 1,606,043 to 1,607,479 _07850 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -2 -1 0 1at 1604.139 kb on + strandat 1604.140 kb on - strandat 1604.140 kb on - strandat 1604.140 kb on - strandat 1604.158 kb on - strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.239 kb on + strandat 1604.240 kb on - strandat 1604.240 kb on - strandat 1604.240 kb on - strandat 1604.531 kb on - strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.755 kb on + strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.756 kb on - strand, within OH686_07840at 1604.852 kb on - strand, within OH686_07840at 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.067 kb on + strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.068 kb on - strandat 1605.085 kb on + strandat 1605.085 kb on + strandat 1605.085 kb on + strandat 1605.085 kb on + strandat 1605.085 kb on + strandat 1605.086 kb on - strandat 1605.086 kb on - strandat 1605.086 kb on - strandat 1605.086 kb on - strandat 1605.086 kb on - strandat 1605.151 kb on - strandat 1605.174 kb on + strandat 1605.174 kb on + strandat 1605.174 kb on + strandat 1605.174 kb on + strandat 1605.175 kb on - strandat 1605.175 kb on - strandat 1605.291 kb on + strand, within OH686_07845at 1605.291 kb on + strand, within OH686_07845at 1605.292 kb on - strand, within OH686_07845at 1605.292 kb on - strand, within OH686_07845at 1605.292 kb on - strand, within OH686_07845at 1605.446 kb on + strand, within OH686_07845at 1605.446 kb on + strand, within OH686_07845at 1605.447 kb on - strand, within OH686_07845at 1605.447 kb on - strand, within OH686_07845at 1605.651 kb on + strand, within OH686_07845at 1605.652 kb on - strand, within OH686_07845at 1605.652 kb on - strand, within OH686_07845at 1605.669 kb on + strand, within OH686_07845at 1605.669 kb on + strand, within OH686_07845at 1605.669 kb on + strand, within OH686_07845at 1605.669 kb on + strand, within OH686_07845at 1605.670 kb on - strand, within OH686_07845at 1605.670 kb on - strand, within OH686_07845at 1605.711 kb on + strand, within OH686_07845at 1605.711 kb on + strand, within OH686_07845at 1605.711 kb on + strand, within OH686_07845at 1605.711 kb on + strand, within OH686_07845at 1605.712 kb on - strand, within OH686_07845at 1605.824 kb on + strand, within OH686_07845at 1605.849 kb on + strand, within OH686_07845at 1605.849 kb on + strand, within OH686_07845at 1605.849 kb on + strand, within OH686_07845at 1605.849 kb on + strand, within OH686_07845at 1605.849 kb on + strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1605.850 kb on - strand, within OH686_07845at 1606.136 kb on + strandat 1606.136 kb on + strandat 1606.136 kb on + strandat 1606.137 kb on - strandat 1606.137 kb on - strandat 1606.137 kb on - strandat 1606.137 kb on - strandat 1606.209 kb on + strand, within OH686_07850at 1606.209 kb on + strand, within OH686_07850at 1606.210 kb on - strand, within OH686_07850at 1606.293 kb on + strand, within OH686_07850at 1606.293 kb on + strand, within OH686_07850at 1606.294 kb on - strand, within OH686_07850at 1606.349 kb on + strand, within OH686_07850at 1606.349 kb on + strand, within OH686_07850at 1606.349 kb on + strand, within OH686_07850at 1606.350 kb on - strand, within OH686_07850at 1606.478 kb on + strand, within OH686_07850at 1606.478 kb on + strand, within OH686_07850at 1606.514 kb on + strand, within OH686_07850at 1606.514 kb on + strand, within OH686_07850at 1606.514 kb on + strand, within OH686_07850at 1606.515 kb on - strand, within OH686_07850at 1606.646 kb on + strand, within OH686_07850at 1606.715 kb on + strand, within OH686_07850at 1606.715 kb on + strand, within OH686_07850at 1606.715 kb on + strand, within OH686_07850at 1606.733 kb on - strand, within OH686_07850at 1606.769 kb on + strand, within OH686_07850at 1606.769 kb on + strand, within OH686_07850at 1606.898 kb on + strand, within OH686_07850at 1606.898 kb on + strand, within OH686_07850at 1606.898 kb on + strand, within OH686_07850at 1606.899 kb on - strand, within OH686_07850at 1606.899 kb on - strand, within OH686_07850at 1606.899 kb on - strand, within OH686_07850at 1606.899 kb on - strand, within OH686_07850at 1606.899 kb on - strand, within OH686_07850

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,604,139 + +0.6
1,604,140 - +0.1
1,604,140 - -0.0
1,604,140 - -0.3
1,604,158 - +0.2
1,604,239 + +0.2
1,604,239 + +0.4
1,604,239 + +0.7
1,604,239 + +0.0
1,604,239 + -1.3
1,604,240 - -0.4
1,604,240 - -0.6
1,604,240 - -0.2
1,604,531 - OH686_07840 0.37 -2.2
1,604,755 + OH686_07840 0.60 +0.5
1,604,755 + OH686_07840 0.60 +0.1
1,604,755 + OH686_07840 0.60 +0.4
1,604,755 + OH686_07840 0.60 -0.6
1,604,755 + OH686_07840 0.60 +0.3
1,604,755 + OH686_07840 0.60 +0.3
1,604,756 - OH686_07840 0.60 -0.0
1,604,756 - OH686_07840 0.60 -0.6
1,604,756 - OH686_07840 0.60 -0.3
1,604,756 - OH686_07840 0.60 +0.3
1,604,756 - OH686_07840 0.60 -0.6
1,604,756 - OH686_07840 0.60 -0.3
1,604,756 - OH686_07840 0.60 -0.4
1,604,756 - OH686_07840 0.60 +0.0
1,604,756 - OH686_07840 0.60 +0.9
1,604,756 - OH686_07840 0.60 +0.4
1,604,756 - OH686_07840 0.60 -0.6
1,604,756 - OH686_07840 0.60 -1.0
1,604,756 - OH686_07840 0.60 -0.4
1,604,852 - OH686_07840 0.70 +0.1
1,605,067 + +0.3
1,605,067 + -0.2
1,605,067 + +0.4
1,605,067 + +0.1
1,605,067 + +0.1
1,605,067 + -0.0
1,605,067 + +0.3
1,605,067 + +0.3
1,605,067 + +0.2
1,605,067 + -0.5
1,605,067 + +0.0
1,605,068 - +0.7
1,605,068 - -0.3
1,605,068 - +0.1
1,605,068 - -0.2
1,605,068 - +0.3
1,605,068 - -1.0
1,605,068 - -0.2
1,605,068 - +1.1
1,605,085 + +0.1
1,605,085 + -0.5
1,605,085 + -0.1
1,605,085 + +0.1
1,605,085 + +0.3
1,605,086 - +0.4
1,605,086 - +0.2
1,605,086 - -0.4
1,605,086 - -0.1
1,605,086 - -0.2
1,605,151 - +0.4
1,605,174 + -0.4
1,605,174 + +0.7
1,605,174 + -0.1
1,605,174 + +1.0
1,605,175 - +0.1
1,605,175 - +0.4
1,605,291 + OH686_07845 0.17 +0.4
1,605,291 + OH686_07845 0.17 -0.2
1,605,292 - OH686_07845 0.18 -0.9
1,605,292 - OH686_07845 0.18 +0.1
1,605,292 - OH686_07845 0.18 +0.9
1,605,446 + OH686_07845 0.34 +0.7
1,605,446 + OH686_07845 0.34 +0.4
1,605,447 - OH686_07845 0.34 +1.1
1,605,447 - OH686_07845 0.34 +0.3
1,605,651 + OH686_07845 0.56 +0.2
1,605,652 - OH686_07845 0.56 +0.5
1,605,652 - OH686_07845 0.56 +0.8
1,605,669 + OH686_07845 0.58 +0.9
1,605,669 + OH686_07845 0.58 +0.7
1,605,669 + OH686_07845 0.58 +0.7
1,605,669 + OH686_07845 0.58 +0.3
1,605,670 - OH686_07845 0.58 +0.2
1,605,670 - OH686_07845 0.58 +0.9
1,605,711 + OH686_07845 0.63 +0.5
1,605,711 + OH686_07845 0.63 +0.4
1,605,711 + OH686_07845 0.63 +0.3
1,605,711 + OH686_07845 0.63 +0.9
1,605,712 - OH686_07845 0.63 +0.7
1,605,824 + OH686_07845 0.75 +0.3
1,605,849 + OH686_07845 0.78 +0.6
1,605,849 + OH686_07845 0.78 +0.4
1,605,849 + OH686_07845 0.78 +0.7
1,605,849 + OH686_07845 0.78 +0.7
1,605,849 + OH686_07845 0.78 +0.7
1,605,850 - OH686_07845 0.78 +0.4
1,605,850 - OH686_07845 0.78 -0.5
1,605,850 - OH686_07845 0.78 +0.5
1,605,850 - OH686_07845 0.78 +0.6
1,605,850 - OH686_07845 0.78 +1.3
1,605,850 - OH686_07845 0.78 +0.8
1,605,850 - OH686_07845 0.78 +0.2
1,606,136 + +1.1
1,606,136 + +0.1
1,606,136 + -0.6
1,606,137 - +1.0
1,606,137 - -1.3
1,606,137 - -0.6
1,606,137 - -0.5
1,606,209 + OH686_07850 0.12 +0.4
1,606,209 + OH686_07850 0.12 +0.4
1,606,210 - OH686_07850 0.12 -1.5
1,606,293 + OH686_07850 0.17 +0.4
1,606,293 + OH686_07850 0.17 -1.4
1,606,294 - OH686_07850 0.17 -0.2
1,606,349 + OH686_07850 0.21 +0.2
1,606,349 + OH686_07850 0.21 +0.5
1,606,349 + OH686_07850 0.21 -0.5
1,606,350 - OH686_07850 0.21 -1.3
1,606,478 + OH686_07850 0.30 +0.2
1,606,478 + OH686_07850 0.30 +0.5
1,606,514 + OH686_07850 0.33 +0.6
1,606,514 + OH686_07850 0.33 -1.6
1,606,514 + OH686_07850 0.33 -0.1
1,606,515 - OH686_07850 0.33 -0.5
1,606,646 + OH686_07850 0.42 +0.5
1,606,715 + OH686_07850 0.47 -0.4
1,606,715 + OH686_07850 0.47 +0.3
1,606,715 + OH686_07850 0.47 +0.2
1,606,733 - OH686_07850 0.48 -0.4
1,606,769 + OH686_07850 0.51 +0.2
1,606,769 + OH686_07850 0.51 -0.4
1,606,898 + OH686_07850 0.59 -0.4
1,606,898 + OH686_07850 0.59 +1.4
1,606,898 + OH686_07850 0.59 +0.0
1,606,899 - OH686_07850 0.60 -0.3
1,606,899 - OH686_07850 0.60 -0.1
1,606,899 - OH686_07850 0.60 +0.7
1,606,899 - OH686_07850 0.60 +0.2
1,606,899 - OH686_07850 0.60 -0.2

Or see this region's nucleotide sequence