Strain Fitness in Pseudomonas sp. S08-1 around OH686_04620

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04615 and OH686_04620 overlap by 4 nucleotidesOH686_04620 and OH686_04625 are separated by 2 nucleotidesOH686_04625 and OH686_04630 are separated by 81 nucleotidesOH686_04630 and OH686_04635 overlap by 9 nucleotides OH686_04615: OH686_04615 - Branched-chain amino acid ABC transporter, permease protein LivM, at 958,143 to 959,402 _04615 OH686_04620: OH686_04620 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG, at 959,399 to 960,166 _04620 OH686_04625: OH686_04625 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF, at 960,169 to 960,870 _04625 OH686_04630: OH686_04630 - CDS, at 960,952 to 961,089 _04630 OH686_04635: OH686_04635 - Serine/threonine:Na+ symporter SstT, at 961,081 to 962,292 _04635 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.512 kb on + strand, within OH686_04615at 958.513 kb on - strand, within OH686_04615at 958.513 kb on - strand, within OH686_04615at 958.513 kb on - strand, within OH686_04615at 958.513 kb on - strand, within OH686_04615at 958.513 kb on - strand, within OH686_04615at 958.513 kb on - strand, within OH686_04615at 958.575 kb on + strand, within OH686_04615at 958.575 kb on + strand, within OH686_04615at 958.588 kb on - strand, within OH686_04615at 958.608 kb on + strand, within OH686_04615at 958.608 kb on + strand, within OH686_04615at 958.608 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.626 kb on + strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.627 kb on - strand, within OH686_04615at 958.629 kb on + strand, within OH686_04615at 958.629 kb on + strand, within OH686_04615at 958.629 kb on + strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.630 kb on - strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.711 kb on + strand, within OH686_04615at 958.712 kb on - strand, within OH686_04615at 958.712 kb on - strand, within OH686_04615at 958.712 kb on - strand, within OH686_04615at 958.712 kb on - strand, within OH686_04615at 958.712 kb on - strand, within OH686_04615at 958.712 kb on - strand, within OH686_04615at 958.728 kb on + strand, within OH686_04615at 958.728 kb on + strand, within OH686_04615at 958.729 kb on - strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.911 kb on + strand, within OH686_04615at 958.912 kb on - strand, within OH686_04615at 958.912 kb on - strand, within OH686_04615at 958.912 kb on - strand, within OH686_04615at 958.942 kb on - strand, within OH686_04615at 959.301 kb on + strandat 959.561 kb on + strand, within OH686_04620at 959.561 kb on + strand, within OH686_04620at 959.561 kb on + strand, within OH686_04620at 959.561 kb on + strand, within OH686_04620at 959.561 kb on + strand, within OH686_04620at 959.561 kb on + strand, within OH686_04620at 959.562 kb on - strand, within OH686_04620at 959.562 kb on - strand, within OH686_04620at 959.562 kb on - strand, within OH686_04620at 959.562 kb on - strand, within OH686_04620at 959.650 kb on + strand, within OH686_04620at 959.650 kb on + strand, within OH686_04620at 959.650 kb on + strand, within OH686_04620at 959.650 kb on + strand, within OH686_04620at 959.795 kb on + strand, within OH686_04620at 959.795 kb on + strand, within OH686_04620at 959.795 kb on + strand, within OH686_04620at 959.994 kb on + strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 959.995 kb on - strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.071 kb on + strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.072 kb on - strand, within OH686_04620at 960.149 kb on + strandat 960.149 kb on + strandat 960.149 kb on + strandat 960.150 kb on - strandat 960.150 kb on - strandat 960.150 kb on - strandat 960.164 kb on + strandat 960.164 kb on + strandat 960.164 kb on + strandat 960.164 kb on + strandat 960.164 kb on + strandat 960.164 kb on + strandat 960.164 kb on + strandat 960.165 kb on - strandat 960.165 kb on - strandat 960.165 kb on - strandat 960.165 kb on - strandat 960.165 kb on - strandat 960.199 kb on + strandat 960.199 kb on + strandat 960.200 kb on - strandat 960.200 kb on - strandat 960.200 kb on - strandat 960.200 kb on - strandat 960.347 kb on - strand, within OH686_04625at 960.347 kb on - strand, within OH686_04625at 960.347 kb on - strand, within OH686_04625at 960.347 kb on - strand, within OH686_04625at 960.347 kb on - strand, within OH686_04625at 960.458 kb on + strand, within OH686_04625at 960.458 kb on + strand, within OH686_04625at 960.458 kb on + strand, within OH686_04625at 960.458 kb on + strand, within OH686_04625at 960.458 kb on + strand, within OH686_04625at 960.459 kb on - strand, within OH686_04625at 960.459 kb on - strand, within OH686_04625at 960.459 kb on - strand, within OH686_04625at 960.459 kb on - strand, within OH686_04625at 960.518 kb on + strand, within OH686_04625at 960.518 kb on + strand, within OH686_04625at 960.518 kb on + strand, within OH686_04625at 960.518 kb on + strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.519 kb on - strand, within OH686_04625at 960.709 kb on - strand, within OH686_04625at 960.778 kb on + strand, within OH686_04625at 960.778 kb on + strand, within OH686_04625at 960.779 kb on - strand, within OH686_04625at 960.779 kb on - strand, within OH686_04625at 960.779 kb on - strand, within OH686_04625at 960.779 kb on - strand, within OH686_04625at 960.779 kb on - strand, within OH686_04625at 960.856 kb on + strandat 960.856 kb on + strandat 960.856 kb on + strandat 960.857 kb on - strandat 960.857 kb on - strandat 960.857 kb on - strandat 960.918 kb on + strandat 960.919 kb on - strandat 960.953 kb on + strandat 960.954 kb on - strandat 960.954 kb on - strandat 960.955 kb on + strandat 960.955 kb on + strandat 960.955 kb on + strandat 960.956 kb on - strandat 960.956 kb on - strandat 960.956 kb on - strandat 960.956 kb on - strandat 960.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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958,512 + OH686_04615 0.29 +0.2
958,512 + OH686_04615 0.29 +1.4
958,512 + OH686_04615 0.29 +1.5
958,512 + OH686_04615 0.29 +0.5
958,512 + OH686_04615 0.29 +1.3
958,512 + OH686_04615 0.29 +0.1
958,512 + OH686_04615 0.29 -0.0
958,512 + OH686_04615 0.29 +0.4
958,512 + OH686_04615 0.29 +1.3
958,512 + OH686_04615 0.29 +0.0
958,512 + OH686_04615 0.29 +0.3
958,513 - OH686_04615 0.29 +0.2
958,513 - OH686_04615 0.29 -0.8
958,513 - OH686_04615 0.29 +1.0
958,513 - OH686_04615 0.29 -0.1
958,513 - OH686_04615 0.29 +1.7
958,513 - OH686_04615 0.29 +0.5
958,575 + OH686_04615 0.34 +0.8
958,575 + OH686_04615 0.34 +0.5
958,588 - OH686_04615 0.35 +0.7
958,608 + OH686_04615 0.37 +0.8
958,608 + OH686_04615 0.37 +0.4
958,608 + OH686_04615 0.37 -0.3
958,626 + OH686_04615 0.38 +0.2
958,626 + OH686_04615 0.38 +0.4
958,626 + OH686_04615 0.38 +0.3
958,626 + OH686_04615 0.38 +0.0
958,626 + OH686_04615 0.38 +1.5
958,626 + OH686_04615 0.38 +0.3
958,626 + OH686_04615 0.38 +0.1
958,626 + OH686_04615 0.38 -0.0
958,626 + OH686_04615 0.38 +0.5
958,626 + OH686_04615 0.38 +1.0
958,627 - OH686_04615 0.38 +0.7
958,627 - OH686_04615 0.38 +0.7
958,627 - OH686_04615 0.38 +1.5
958,627 - OH686_04615 0.38 +0.4
958,627 - OH686_04615 0.38 +0.5
958,627 - OH686_04615 0.38 +0.1
958,627 - OH686_04615 0.38 +0.0
958,629 + OH686_04615 0.39 +0.2
958,629 + OH686_04615 0.39 +0.6
958,629 + OH686_04615 0.39 -2.5
958,630 - OH686_04615 0.39 +0.1
958,630 - OH686_04615 0.39 +0.7
958,630 - OH686_04615 0.39 +0.2
958,630 - OH686_04615 0.39 +0.8
958,630 - OH686_04615 0.39 +0.0
958,630 - OH686_04615 0.39 +1.1
958,630 - OH686_04615 0.39 +0.4
958,630 - OH686_04615 0.39 +0.5
958,630 - OH686_04615 0.39 +0.2
958,711 + OH686_04615 0.45 +0.5
958,711 + OH686_04615 0.45 +0.4
958,711 + OH686_04615 0.45 +0.3
958,711 + OH686_04615 0.45 +0.1
958,711 + OH686_04615 0.45 -1.2
958,711 + OH686_04615 0.45 -0.2
958,711 + OH686_04615 0.45 +0.9
958,712 - OH686_04615 0.45 +0.8
958,712 - OH686_04615 0.45 +0.4
958,712 - OH686_04615 0.45 -0.2
958,712 - OH686_04615 0.45 -0.4
958,712 - OH686_04615 0.45 +0.1
958,712 - OH686_04615 0.45 -0.0
958,728 + OH686_04615 0.46 +0.3
958,728 + OH686_04615 0.46 +0.2
958,729 - OH686_04615 0.47 +0.1
958,911 + OH686_04615 0.61 -0.7
958,911 + OH686_04615 0.61 +0.2
958,911 + OH686_04615 0.61 +0.8
958,911 + OH686_04615 0.61 -0.2
958,911 + OH686_04615 0.61 +0.4
958,911 + OH686_04615 0.61 +0.9
958,911 + OH686_04615 0.61 +0.9
958,911 + OH686_04615 0.61 +1.0
958,911 + OH686_04615 0.61 +0.6
958,912 - OH686_04615 0.61 +0.7
958,912 - OH686_04615 0.61 +0.6
958,912 - OH686_04615 0.61 +0.4
958,942 - OH686_04615 0.63 +0.5
959,301 + +0.8
959,561 + OH686_04620 0.21 +0.2
959,561 + OH686_04620 0.21 +0.7
959,561 + OH686_04620 0.21 +0.3
959,561 + OH686_04620 0.21 +1.0
959,561 + OH686_04620 0.21 -0.2
959,561 + OH686_04620 0.21 +0.4
959,562 - OH686_04620 0.21 +0.1
959,562 - OH686_04620 0.21 -0.1
959,562 - OH686_04620 0.21 +0.9
959,562 - OH686_04620 0.21 +1.2
959,650 + OH686_04620 0.33 +0.6
959,650 + OH686_04620 0.33 +0.2
959,650 + OH686_04620 0.33 +0.7
959,650 + OH686_04620 0.33 +0.3
959,795 + OH686_04620 0.52 +1.2
959,795 + OH686_04620 0.52 +0.7
959,795 + OH686_04620 0.52 -0.1
959,994 + OH686_04620 0.77 +1.0
959,995 - OH686_04620 0.78 -0.7
959,995 - OH686_04620 0.78 +0.7
959,995 - OH686_04620 0.78 -0.0
959,995 - OH686_04620 0.78 +0.3
959,995 - OH686_04620 0.78 -0.1
959,995 - OH686_04620 0.78 +0.6
959,995 - OH686_04620 0.78 +0.4
960,071 + OH686_04620 0.88 +0.1
960,071 + OH686_04620 0.88 +0.3
960,071 + OH686_04620 0.88 +0.1
960,071 + OH686_04620 0.88 -0.8
960,071 + OH686_04620 0.88 +0.4
960,071 + OH686_04620 0.88 +0.4
960,071 + OH686_04620 0.88 -0.3
960,071 + OH686_04620 0.88 +0.7
960,071 + OH686_04620 0.88 +0.6
960,071 + OH686_04620 0.88 -0.0
960,071 + OH686_04620 0.88 +0.2
960,071 + OH686_04620 0.88 +0.1
960,071 + OH686_04620 0.88 +0.3
960,071 + OH686_04620 0.88 +0.3
960,071 + OH686_04620 0.88 +0.5
960,071 + OH686_04620 0.88 +0.2
960,071 + OH686_04620 0.88 +0.0
960,071 + OH686_04620 0.88 +0.4
960,071 + OH686_04620 0.88 +0.3
960,071 + OH686_04620 0.88 +1.0
960,071 + OH686_04620 0.88 +0.8
960,071 + OH686_04620 0.88 +0.6
960,071 + OH686_04620 0.88 -0.7
960,071 + OH686_04620 0.88 +0.2
960,071 + OH686_04620 0.88 -0.0
960,071 + OH686_04620 0.88 -1.4
960,071 + OH686_04620 0.88 +0.8
960,071 + OH686_04620 0.88 +0.9
960,071 + OH686_04620 0.88 -0.3
960,072 - OH686_04620 0.88 +1.1
960,072 - OH686_04620 0.88 +1.1
960,072 - OH686_04620 0.88 +0.3
960,072 - OH686_04620 0.88 +1.2
960,072 - OH686_04620 0.88 +0.3
960,072 - OH686_04620 0.88 +0.5
960,072 - OH686_04620 0.88 +1.4
960,072 - OH686_04620 0.88 +0.1
960,072 - OH686_04620 0.88 +0.6
960,072 - OH686_04620 0.88 +0.9
960,072 - OH686_04620 0.88 +0.7
960,072 - OH686_04620 0.88 +0.3
960,072 - OH686_04620 0.88 +0.6
960,072 - OH686_04620 0.88 -0.1
960,072 - OH686_04620 0.88 +0.8
960,072 - OH686_04620 0.88 +0.5
960,072 - OH686_04620 0.88 -0.1
960,072 - OH686_04620 0.88 +0.4
960,072 - OH686_04620 0.88 -0.2
960,072 - OH686_04620 0.88 +0.9
960,072 - OH686_04620 0.88 +0.5
960,149 + +0.5
960,149 + +0.5
960,149 + +0.1
960,150 - -0.0
960,150 - -0.6
960,150 - +0.4
960,164 + -0.6
960,164 + -0.5
960,164 + +0.5
960,164 + +0.1
960,164 + +0.4
960,164 + -0.9
960,164 + +0.2
960,165 - +1.0
960,165 - +0.5
960,165 - +0.2
960,165 - +0.6
960,165 - +0.8
960,199 + -0.5
960,199 + +0.2
960,200 - -0.4
960,200 - +0.5
960,200 - -0.2
960,200 - +0.7
960,347 - OH686_04625 0.25 +0.7
960,347 - OH686_04625 0.25 +0.5
960,347 - OH686_04625 0.25 +1.6
960,347 - OH686_04625 0.25 -1.1
960,347 - OH686_04625 0.25 -0.1
960,458 + OH686_04625 0.41 -0.0
960,458 + OH686_04625 0.41 -0.4
960,458 + OH686_04625 0.41 +0.2
960,458 + OH686_04625 0.41 +1.1
960,458 + OH686_04625 0.41 +0.4
960,459 - OH686_04625 0.41 +0.1
960,459 - OH686_04625 0.41 -0.0
960,459 - OH686_04625 0.41 +0.0
960,459 - OH686_04625 0.41 +0.8
960,518 + OH686_04625 0.50 +1.1
960,518 + OH686_04625 0.50 +0.4
960,518 + OH686_04625 0.50 +1.0
960,518 + OH686_04625 0.50 +0.4
960,519 - OH686_04625 0.50 +1.0
960,519 - OH686_04625 0.50 +0.7
960,519 - OH686_04625 0.50 +0.4
960,519 - OH686_04625 0.50 +0.6
960,519 - OH686_04625 0.50 +0.3
960,519 - OH686_04625 0.50 +0.2
960,519 - OH686_04625 0.50 +1.1
960,519 - OH686_04625 0.50 -0.2
960,519 - OH686_04625 0.50 +0.4
960,709 - OH686_04625 0.77 +1.3
960,778 + OH686_04625 0.87 +1.7
960,778 + OH686_04625 0.87 +0.4
960,779 - OH686_04625 0.87 -0.4
960,779 - OH686_04625 0.87 +0.7
960,779 - OH686_04625 0.87 +1.0
960,779 - OH686_04625 0.87 +1.2
960,779 - OH686_04625 0.87 +0.9
960,856 + +0.6
960,856 + +1.1
960,856 + +0.2
960,857 - +0.7
960,857 - +1.4
960,857 - +0.8
960,918 + -0.6
960,919 - +0.1
960,953 + +0.6
960,954 - +0.1
960,954 - -0.1
960,955 + +0.2
960,955 + +0.4
960,955 + -0.1
960,956 - -0.1
960,956 - -0.1
960,956 - +0.0
960,956 - -1.1
960,956 - -1.3

Or see this region's nucleotide sequence