Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4589

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4587 and Echvi_4588 overlap by 4 nucleotidesEchvi_4588 and Echvi_4589 are separated by 9 nucleotidesEchvi_4589 and Echvi_4590 are separated by 224 nucleotides Echvi_4587: Echvi_4587 - hypothetical protein, at 5,494,795 to 5,495,298 _4587 Echvi_4588: Echvi_4588 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 5,495,295 to 5,496,233 _4588 Echvi_4589: Echvi_4589 - MoxR-like ATPases, at 5,496,243 to 5,497,169 _4589 Echvi_4590: Echvi_4590 - Arylsulfatase A and related enzymes, at 5,497,394 to 5,498,905 _4590 Position (kb) 5496 5497 5498Strain fitness (log2 ratio) -2 -1 0 1 2at 5495.312 kb on + strandat 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.463 kb on + strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.464 kb on - strand, within Echvi_4588at 5495.466 kb on - strand, within Echvi_4588at 5495.466 kb on - strand, within Echvi_4588at 5495.534 kb on - strand, within Echvi_4588at 5495.558 kb on + strand, within Echvi_4588at 5495.581 kb on + strand, within Echvi_4588at 5495.603 kb on - strand, within Echvi_4588at 5495.645 kb on + strand, within Echvi_4588at 5495.652 kb on - strand, within Echvi_4588at 5495.934 kb on + strand, within Echvi_4588at 5495.982 kb on - strand, within Echvi_4588at 5496.046 kb on + strand, within Echvi_4588at 5496.047 kb on - strand, within Echvi_4588at 5496.116 kb on + strand, within Echvi_4588at 5496.164 kb on - strandat 5496.164 kb on - strandat 5496.195 kb on - strandat 5496.212 kb on - strandat 5496.234 kb on - strandat 5496.244 kb on + strandat 5496.245 kb on - strandat 5496.250 kb on - strandat 5496.252 kb on + strandat 5496.258 kb on + strandat 5496.259 kb on - strandat 5496.263 kb on + strandat 5496.264 kb on - strandat 5496.319 kb on + strandat 5496.319 kb on + strandat 5496.319 kb on + strandat 5496.319 kb on + strandat 5496.320 kb on - strandat 5496.320 kb on - strandat 5496.435 kb on + strand, within Echvi_4589at 5496.490 kb on + strand, within Echvi_4589at 5496.519 kb on - strand, within Echvi_4589at 5496.525 kb on + strand, within Echvi_4589at 5496.526 kb on - strand, within Echvi_4589at 5496.531 kb on - strand, within Echvi_4589at 5496.532 kb on + strand, within Echvi_4589at 5496.742 kb on + strand, within Echvi_4589at 5496.917 kb on + strand, within Echvi_4589at 5497.124 kb on + strandat 5497.143 kb on - strandat 5497.154 kb on + strandat 5497.178 kb on + strandat 5497.210 kb on + strandat 5497.210 kb on + strandat 5497.210 kb on + strandat 5497.211 kb on - strandat 5497.211 kb on - strandat 5497.232 kb on - strandat 5497.254 kb on - strandat 5497.290 kb on + strandat 5497.375 kb on - strandat 5497.528 kb on + strandat 5497.528 kb on + strandat 5497.529 kb on - strandat 5497.539 kb on + strandat 5497.539 kb on + strandat 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.551 kb on + strand, within Echvi_4590at 5497.552 kb on - strand, within Echvi_4590at 5497.552 kb on - strand, within Echvi_4590at 5497.552 kb on - strand, within Echvi_4590at 5497.592 kb on + strand, within Echvi_4590at 5497.592 kb on + strand, within Echvi_4590at 5497.643 kb on - strand, within Echvi_4590at 5497.660 kb on + strand, within Echvi_4590at 5497.678 kb on + strand, within Echvi_4590at 5497.679 kb on - strand, within Echvi_4590at 5497.684 kb on - strand, within Echvi_4590at 5497.697 kb on + strand, within Echvi_4590at 5497.698 kb on - strand, within Echvi_4590at 5497.702 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strandat 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.774 kb on + strand, within Echvi_4590at 5497.775 kb on - strand, within Echvi_4590at 5497.775 kb on - strand, within Echvi_4590at 5497.775 kb on - strand, within Echvi_4590at 5497.775 kb on - strand, within Echvi_4590at 5497.777 kb on + strand, within Echvi_4590at 5497.777 kb on + strand, within Echvi_4590at 5497.777 kb on + strand, within Echvi_4590at 5497.777 kb on + strand, within Echvi_4590at 5497.777 kb on + strand, within Echvi_4590at 5497.778 kb on - strand, within Echvi_4590at 5497.780 kb on - strand, within Echvi_4590at 5497.780 kb on - strand, within Echvi_4590at 5497.822 kb on - strand, within Echvi_4590at 5497.847 kb on - strand, within Echvi_4590at 5497.885 kb on + strand, within Echvi_4590at 5497.909 kb on + strand, within Echvi_4590at 5497.910 kb on - strand, within Echvi_4590at 5497.913 kb on + strand, within Echvi_4590at 5498.011 kb on + strand, within Echvi_4590at 5498.011 kb on + strand, within Echvi_4590at 5498.011 kb on + strand, within Echvi_4590at 5498.053 kb on + strand, within Echvi_4590at 5498.054 kb on - strand, within Echvi_4590at 5498.058 kb on + strand, within Echvi_4590at 5498.058 kb on + strand, within Echvi_4590at 5498.097 kb on - strand, within Echvi_4590

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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5,495,312 + +0.1
5,495,463 + Echvi_4588 0.18 -1.1
5,495,463 + Echvi_4588 0.18 +0.7
5,495,463 + Echvi_4588 0.18 +0.9
5,495,463 + Echvi_4588 0.18 +0.6
5,495,463 + Echvi_4588 0.18 +0.6
5,495,463 + Echvi_4588 0.18 +0.4
5,495,464 - Echvi_4588 0.18 -0.1
5,495,464 - Echvi_4588 0.18 -1.2
5,495,464 - Echvi_4588 0.18 +1.7
5,495,464 - Echvi_4588 0.18 +0.4
5,495,466 - Echvi_4588 0.18 -0.5
5,495,466 - Echvi_4588 0.18 +0.4
5,495,534 - Echvi_4588 0.25 -0.5
5,495,558 + Echvi_4588 0.28 +0.2
5,495,581 + Echvi_4588 0.30 +0.4
5,495,603 - Echvi_4588 0.33 -0.6
5,495,645 + Echvi_4588 0.37 -1.4
5,495,652 - Echvi_4588 0.38 +0.7
5,495,934 + Echvi_4588 0.68 +0.6
5,495,982 - Echvi_4588 0.73 +0.3
5,496,046 + Echvi_4588 0.80 +0.2
5,496,047 - Echvi_4588 0.80 -1.2
5,496,116 + Echvi_4588 0.87 +0.6
5,496,164 - +0.3
5,496,164 - -0.5
5,496,195 - -0.3
5,496,212 - -0.2
5,496,234 - +0.0
5,496,244 + +0.8
5,496,245 - +0.6
5,496,250 - +0.6
5,496,252 + -0.1
5,496,258 + +0.3
5,496,259 - -0.2
5,496,263 + +0.8
5,496,264 - -0.7
5,496,319 + +0.1
5,496,319 + -1.0
5,496,319 + +1.0
5,496,319 + +0.1
5,496,320 - +0.2
5,496,320 - -0.9
5,496,435 + Echvi_4589 0.21 +1.9
5,496,490 + Echvi_4589 0.27 -0.1
5,496,519 - Echvi_4589 0.30 +0.9
5,496,525 + Echvi_4589 0.30 -0.8
5,496,526 - Echvi_4589 0.31 +1.6
5,496,531 - Echvi_4589 0.31 +0.6
5,496,532 + Echvi_4589 0.31 +0.6
5,496,742 + Echvi_4589 0.54 +0.3
5,496,917 + Echvi_4589 0.73 +1.2
5,497,124 + -0.6
5,497,143 - -1.0
5,497,154 + +0.6
5,497,178 + +0.0
5,497,210 + -0.2
5,497,210 + -0.9
5,497,210 + +0.0
5,497,211 - -0.1
5,497,211 - -1.2
5,497,232 - -0.5
5,497,254 - -0.3
5,497,290 + -0.1
5,497,375 - -2.4
5,497,528 + +0.5
5,497,528 + +0.6
5,497,529 - -1.0
5,497,539 + +0.3
5,497,539 + -0.2
5,497,551 + Echvi_4590 0.10 +0.7
5,497,551 + Echvi_4590 0.10 +0.5
5,497,551 + Echvi_4590 0.10 -0.5
5,497,551 + Echvi_4590 0.10 +2.3
5,497,551 + Echvi_4590 0.10 -0.3
5,497,551 + Echvi_4590 0.10 -0.2
5,497,551 + Echvi_4590 0.10 +0.3
5,497,551 + Echvi_4590 0.10 +1.3
5,497,551 + Echvi_4590 0.10 -0.5
5,497,551 + Echvi_4590 0.10 -0.1
5,497,551 + Echvi_4590 0.10 -0.8
5,497,552 - Echvi_4590 0.10 -1.0
5,497,552 - Echvi_4590 0.10 -1.2
5,497,552 - Echvi_4590 0.10 +0.5
5,497,592 + Echvi_4590 0.13 -0.1
5,497,592 + Echvi_4590 0.13 -0.1
5,497,643 - Echvi_4590 0.16 -1.4
5,497,660 + Echvi_4590 0.18 -0.3
5,497,678 + Echvi_4590 0.19 +0.6
5,497,679 - Echvi_4590 0.19 +1.8
5,497,684 - Echvi_4590 0.19 +0.8
5,497,697 + Echvi_4590 0.20 +0.3
5,497,698 - Echvi_4590 0.20 -0.4
5,497,702 + Echvi_4590 0.20 +0.7
5,497,774 + Echvi_4590 0.25 +0.4
5,497,774 + +0.5
5,497,774 + Echvi_4590 0.25 +0.7
5,497,774 + Echvi_4590 0.25 -0.0
5,497,774 + Echvi_4590 0.25 +0.9
5,497,774 + Echvi_4590 0.25 +0.9
5,497,774 + Echvi_4590 0.25 -1.0
5,497,774 + Echvi_4590 0.25 +0.6
5,497,774 + Echvi_4590 0.25 -0.4
5,497,774 + Echvi_4590 0.25 +0.6
5,497,775 - Echvi_4590 0.25 +1.1
5,497,775 - Echvi_4590 0.25 +0.5
5,497,775 - Echvi_4590 0.25 +0.4
5,497,775 - Echvi_4590 0.25 -1.9
5,497,777 + Echvi_4590 0.25 +0.1
5,497,777 + Echvi_4590 0.25 -0.7
5,497,777 + Echvi_4590 0.25 +0.9
5,497,777 + Echvi_4590 0.25 -0.0
5,497,777 + Echvi_4590 0.25 +0.4
5,497,778 - Echvi_4590 0.25 -1.1
5,497,780 - Echvi_4590 0.26 +0.5
5,497,780 - Echvi_4590 0.26 -0.9
5,497,822 - Echvi_4590 0.28 +0.3
5,497,847 - Echvi_4590 0.30 -0.3
5,497,885 + Echvi_4590 0.32 +1.2
5,497,909 + Echvi_4590 0.34 -0.3
5,497,910 - Echvi_4590 0.34 +0.0
5,497,913 + Echvi_4590 0.34 +0.5
5,498,011 + Echvi_4590 0.41 +0.3
5,498,011 + Echvi_4590 0.41 -1.0
5,498,011 + Echvi_4590 0.41 +0.8
5,498,053 + Echvi_4590 0.44 +0.4
5,498,054 - Echvi_4590 0.44 -0.6
5,498,058 + Echvi_4590 0.44 +0.9
5,498,058 + Echvi_4590 0.44 +0.0
5,498,097 - Echvi_4590 0.46 -0.2

Or see this region's nucleotide sequence