Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4276

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4273 and Echvi_4274 are separated by 9 nucleotidesEchvi_4274 and Echvi_4275 are separated by 112 nucleotidesEchvi_4275 and Echvi_4276 are separated by 24 nucleotidesEchvi_4276 and Echvi_4277 overlap by 8 nucleotidesEchvi_4277 and Echvi_4278 are separated by 21 nucleotidesEchvi_4278 and Echvi_4279 are separated by 18 nucleotides Echvi_4273: Echvi_4273 - Uncharacterized conserved protein, at 5,123,566 to 5,124,030 _4273 Echvi_4274: Echvi_4274 - Predicted transcriptional regulators, at 5,124,040 to 5,124,360 _4274 Echvi_4275: Echvi_4275 - hypothetical protein, at 5,124,473 to 5,124,901 _4275 Echvi_4276: Echvi_4276 - hypothetical protein, at 5,124,926 to 5,125,168 _4276 Echvi_4277: Echvi_4277 - Cupin domain., at 5,125,161 to 5,125,565 _4277 Echvi_4278: Echvi_4278 - hypothetical protein, at 5,125,587 to 5,125,964 _4278 Echvi_4279: Echvi_4279 - hypothetical protein, at 5,125,983 to 5,126,195 _4279 Position (kb) 5124 5125 5126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5123.934 kb on - strand, within Echvi_4273at 5123.934 kb on - strand, within Echvi_4273at 5123.943 kb on - strand, within Echvi_4273at 5123.944 kb on + strand, within Echvi_4273at 5123.974 kb on + strand, within Echvi_4273at 5123.975 kb on - strand, within Echvi_4273at 5123.976 kb on + strand, within Echvi_4273at 5123.976 kb on + strand, within Echvi_4273at 5123.976 kb on + strand, within Echvi_4273at 5123.977 kb on - strand, within Echvi_4273at 5124.030 kb on + strandat 5124.030 kb on + strandat 5124.030 kb on + strandat 5124.031 kb on - strandat 5124.041 kb on + strandat 5124.065 kb on - strandat 5124.127 kb on + strand, within Echvi_4274at 5124.161 kb on + strand, within Echvi_4274at 5124.300 kb on + strand, within Echvi_4274at 5124.304 kb on + strand, within Echvi_4274at 5124.420 kb on + strandat 5124.420 kb on + strandat 5124.425 kb on + strandat 5124.425 kb on + strandat 5124.425 kb on + strandat 5124.425 kb on + strandat 5124.426 kb on - strandat 5124.426 kb on - strandat 5124.449 kb on + strandat 5124.556 kb on + strand, within Echvi_4275at 5124.641 kb on + strand, within Echvi_4275at 5124.648 kb on + strand, within Echvi_4275at 5124.649 kb on - strand, within Echvi_4275at 5124.661 kb on + strand, within Echvi_4275at 5124.675 kb on + strandat 5124.797 kb on + strand, within Echvi_4275at 5124.822 kb on + strand, within Echvi_4275at 5124.900 kb on - strandat 5124.924 kb on + strandat 5124.925 kb on - strandat 5124.925 kb on - strandat 5124.925 kb on - strandat 5124.927 kb on + strandat 5124.932 kb on + strandat 5124.948 kb on - strandat 5124.961 kb on + strand, within Echvi_4276at 5124.970 kb on + strand, within Echvi_4276at 5124.983 kb on + strand, within Echvi_4276at 5124.983 kb on + strand, within Echvi_4276at 5124.991 kb on + strand, within Echvi_4276at 5124.991 kb on + strand, within Echvi_4276at 5124.991 kb on + strand, within Echvi_4276at 5124.992 kb on - strand, within Echvi_4276at 5124.992 kb on - strand, within Echvi_4276at 5125.021 kb on + strand, within Echvi_4276at 5125.049 kb on - strand, within Echvi_4276at 5125.194 kb on + strandat 5125.195 kb on - strandat 5125.348 kb on - strand, within Echvi_4277at 5125.348 kb on - strand, within Echvi_4277at 5125.350 kb on - strand, within Echvi_4277at 5125.355 kb on + strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.358 kb on + strand, within Echvi_4277at 5125.358 kb on + strand, within Echvi_4277at 5125.358 kb on + strand, within Echvi_4277at 5125.359 kb on - strand, within Echvi_4277at 5125.367 kb on + strand, within Echvi_4277at 5125.368 kb on - strand, within Echvi_4277at 5125.372 kb on + strand, within Echvi_4277at 5125.377 kb on + strand, within Echvi_4277at 5125.452 kb on - strand, within Echvi_4277at 5125.453 kb on + strand, within Echvi_4277at 5125.454 kb on - strand, within Echvi_4277at 5125.457 kb on + strand, within Echvi_4277at 5125.457 kb on + strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.460 kb on + strand, within Echvi_4277at 5125.502 kb on + strand, within Echvi_4277at 5125.513 kb on + strand, within Echvi_4277at 5125.521 kb on - strand, within Echvi_4277at 5125.521 kb on - strand, within Echvi_4277at 5125.521 kb on - strand, within Echvi_4277at 5125.537 kb on - strandat 5125.569 kb on - strandat 5125.588 kb on + strandat 5125.588 kb on + strandat 5125.588 kb on + strandat 5125.588 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.591 kb on - strandat 5125.591 kb on - strandat 5125.591 kb on - strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.603 kb on + strandat 5125.603 kb on + strandat 5125.604 kb on - strandat 5125.669 kb on + strand, within Echvi_4278at 5125.695 kb on + strand, within Echvi_4278at 5125.763 kb on + strand, within Echvi_4278at 5125.780 kb on - strand, within Echvi_4278at 5125.940 kb on + strandat 5125.940 kb on + strandat 5125.953 kb on + strandat 5125.976 kb on + strandat 5125.976 kb on + strandat 5126.005 kb on + strand, within Echvi_4279at 5126.006 kb on - strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.089 kb on - strand, within Echvi_4279at 5126.166 kb on + strand, within Echvi_4279at 5126.167 kb on - strand, within Echvi_4279at 5126.167 kb on - strand, within Echvi_4279

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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5,123,934 - Echvi_4273 0.79 +0.5
5,123,934 - Echvi_4273 0.79 +0.5
5,123,943 - Echvi_4273 0.81 -0.0
5,123,944 + Echvi_4273 0.81 +0.6
5,123,974 + Echvi_4273 0.88 -0.2
5,123,975 - Echvi_4273 0.88 -0.2
5,123,976 + Echvi_4273 0.88 +0.6
5,123,976 + Echvi_4273 0.88 -0.4
5,123,976 + Echvi_4273 0.88 +0.5
5,123,977 - Echvi_4273 0.88 -0.2
5,124,030 + +0.2
5,124,030 + +1.1
5,124,030 + +0.1
5,124,031 - +0.9
5,124,041 + -0.6
5,124,065 - -1.1
5,124,127 + Echvi_4274 0.27 -0.1
5,124,161 + Echvi_4274 0.38 +0.1
5,124,300 + Echvi_4274 0.81 -0.0
5,124,304 + Echvi_4274 0.82 -0.3
5,124,420 + +0.7
5,124,420 + -0.5
5,124,425 + -0.3
5,124,425 + -0.5
5,124,425 + +1.3
5,124,425 + -0.8
5,124,426 - -0.7
5,124,426 - -0.3
5,124,449 + +0.1
5,124,556 + Echvi_4275 0.19 +0.7
5,124,641 + Echvi_4275 0.39 +0.2
5,124,648 + Echvi_4275 0.41 +1.4
5,124,649 - Echvi_4275 0.41 -0.6
5,124,661 + Echvi_4275 0.44 -0.3
5,124,675 + -0.1
5,124,797 + Echvi_4275 0.76 +0.0
5,124,822 + Echvi_4275 0.81 -0.6
5,124,900 - +0.2
5,124,924 + +0.4
5,124,925 - -0.4
5,124,925 - +1.0
5,124,925 - -0.6
5,124,927 + +0.7
5,124,932 + -0.3
5,124,948 - -0.2
5,124,961 + Echvi_4276 0.14 +0.5
5,124,970 + Echvi_4276 0.18 +0.1
5,124,983 + Echvi_4276 0.23 +1.0
5,124,983 + Echvi_4276 0.23 +1.2
5,124,991 + Echvi_4276 0.27 -0.1
5,124,991 + Echvi_4276 0.27 +0.2
5,124,991 + Echvi_4276 0.27 -2.2
5,124,992 - Echvi_4276 0.27 +0.5
5,124,992 - Echvi_4276 0.27 +0.7
5,125,021 + Echvi_4276 0.39 -0.5
5,125,049 - Echvi_4276 0.51 +0.7
5,125,194 + +0.4
5,125,195 - +0.2
5,125,348 - Echvi_4277 0.46 -0.5
5,125,348 - Echvi_4277 0.46 -3.0
5,125,350 - Echvi_4277 0.47 -1.2
5,125,355 + Echvi_4277 0.48 +1.2
5,125,356 - Echvi_4277 0.48 +1.5
5,125,356 - Echvi_4277 0.48 -0.2
5,125,356 - Echvi_4277 0.48 +0.2
5,125,356 - Echvi_4277 0.48 -1.2
5,125,356 - Echvi_4277 0.48 -0.6
5,125,356 - Echvi_4277 0.48 +0.9
5,125,358 + Echvi_4277 0.49 -0.2
5,125,358 + Echvi_4277 0.49 +0.6
5,125,358 + Echvi_4277 0.49 +0.1
5,125,359 - Echvi_4277 0.49 -1.4
5,125,367 + Echvi_4277 0.51 +1.7
5,125,368 - Echvi_4277 0.51 -0.2
5,125,372 + Echvi_4277 0.52 +0.5
5,125,377 + Echvi_4277 0.53 +0.6
5,125,452 - Echvi_4277 0.72 +0.1
5,125,453 + Echvi_4277 0.72 -2.9
5,125,454 - Echvi_4277 0.72 +0.1
5,125,457 + Echvi_4277 0.73 +0.4
5,125,457 + Echvi_4277 0.73 +0.3
5,125,458 - Echvi_4277 0.73 +0.1
5,125,458 - Echvi_4277 0.73 +0.4
5,125,458 - Echvi_4277 0.73 -0.8
5,125,458 - Echvi_4277 0.73 +0.0
5,125,458 - Echvi_4277 0.73 -0.5
5,125,460 + Echvi_4277 0.74 +0.9
5,125,502 + Echvi_4277 0.84 +0.8
5,125,513 + Echvi_4277 0.87 +1.8
5,125,521 - Echvi_4277 0.89 -0.1
5,125,521 - Echvi_4277 0.89 -0.1
5,125,521 - Echvi_4277 0.89 +0.1
5,125,537 - -2.6
5,125,569 - -0.2
5,125,588 + -0.3
5,125,588 + +0.4
5,125,588 + +0.3
5,125,588 + -0.2
5,125,590 + +0.2
5,125,590 + +0.2
5,125,590 + -0.1
5,125,590 + -0.5
5,125,590 + +0.2
5,125,590 + +0.4
5,125,590 + -0.2
5,125,590 + -0.2
5,125,591 - -0.5
5,125,591 - +0.6
5,125,591 - +0.0
5,125,596 + +0.6
5,125,596 + -0.1
5,125,597 - -0.5
5,125,597 - -1.4
5,125,597 - +0.4
5,125,603 + -0.2
5,125,603 + +0.4
5,125,604 - +0.4
5,125,669 + Echvi_4278 0.22 +0.4
5,125,695 + Echvi_4278 0.29 -0.1
5,125,763 + Echvi_4278 0.47 +0.1
5,125,780 - Echvi_4278 0.51 -0.3
5,125,940 + -0.5
5,125,940 + +1.0
5,125,953 + -0.1
5,125,976 + +1.1
5,125,976 + +0.6
5,126,005 + Echvi_4279 0.10 -0.8
5,126,006 - Echvi_4279 0.11 -0.5
5,126,011 + Echvi_4279 0.13 +0.4
5,126,011 + Echvi_4279 0.13 +0.3
5,126,011 + Echvi_4279 0.13 +0.1
5,126,011 + Echvi_4279 0.13 -0.1
5,126,011 + Echvi_4279 0.13 -0.2
5,126,011 + Echvi_4279 0.13 +2.5
5,126,011 + Echvi_4279 0.13 +0.3
5,126,012 - Echvi_4279 0.14 -1.0
5,126,012 - Echvi_4279 0.14 -2.6
5,126,012 - Echvi_4279 0.14 +0.6
5,126,012 - Echvi_4279 0.14 +0.0
5,126,012 - Echvi_4279 0.14 -0.5
5,126,012 - Echvi_4279 0.14 -0.1
5,126,089 - Echvi_4279 0.50 -2.8
5,126,166 + Echvi_4279 0.86 -0.1
5,126,167 - Echvi_4279 0.86 +1.0
5,126,167 - Echvi_4279 0.86 -0.3

Or see this region's nucleotide sequence