Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4209

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4208 and Echvi_4209 overlap by 4 nucleotidesEchvi_4209 and Echvi_4210 are separated by 68 nucleotides Echvi_4208: Echvi_4208 - Signal transduction histidine kinase, at 5,035,169 to 5,036,545 _4208 Echvi_4209: Echvi_4209 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 5,036,542 to 5,037,207 _4209 Echvi_4210: Echvi_4210 - RND family efflux transporter, MFP subunit, at 5,037,276 to 5,038,439 _4210 Position (kb) 5036 5037 5038Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5035.552 kb on + strand, within Echvi_4208at 5035.561 kb on + strand, within Echvi_4208at 5035.562 kb on - strand, within Echvi_4208at 5035.562 kb on - strand, within Echvi_4208at 5035.562 kb on - strand, within Echvi_4208at 5035.577 kb on + strand, within Echvi_4208at 5035.578 kb on - strand, within Echvi_4208at 5035.658 kb on + strand, within Echvi_4208at 5035.684 kb on + strand, within Echvi_4208at 5035.748 kb on + strand, within Echvi_4208at 5035.749 kb on - strand, within Echvi_4208at 5035.749 kb on - strand, within Echvi_4208at 5035.887 kb on + strand, within Echvi_4208at 5035.970 kb on - strand, within Echvi_4208at 5036.002 kb on - strand, within Echvi_4208at 5036.075 kb on + strand, within Echvi_4208at 5036.075 kb on + strand, within Echvi_4208at 5036.114 kb on - strand, within Echvi_4208at 5036.185 kb on + strand, within Echvi_4208at 5036.186 kb on - strand, within Echvi_4208at 5036.186 kb on - strand, within Echvi_4208at 5036.188 kb on + strand, within Echvi_4208at 5036.188 kb on + strandat 5036.188 kb on + strand, within Echvi_4208at 5036.188 kb on + strand, within Echvi_4208at 5036.189 kb on - strand, within Echvi_4208at 5036.189 kb on - strand, within Echvi_4208at 5036.189 kb on - strand, within Echvi_4208at 5036.281 kb on + strand, within Echvi_4208at 5036.350 kb on + strand, within Echvi_4208at 5036.356 kb on - strand, within Echvi_4208at 5036.395 kb on + strand, within Echvi_4208at 5036.396 kb on - strand, within Echvi_4208at 5036.396 kb on - strand, within Echvi_4208at 5036.406 kb on + strand, within Echvi_4208at 5036.407 kb on - strand, within Echvi_4208at 5036.407 kb on - strand, within Echvi_4208at 5036.417 kb on - strandat 5036.417 kb on - strandat 5036.434 kb on - strandat 5036.448 kb on - strandat 5036.458 kb on - strandat 5036.479 kb on + strandat 5036.479 kb on + strandat 5036.480 kb on - strandat 5036.480 kb on - strandat 5036.482 kb on + strandat 5036.503 kb on + strandat 5036.503 kb on + strandat 5036.504 kb on - strandat 5036.504 kb on - strandat 5036.504 kb on - strandat 5036.506 kb on - strandat 5036.509 kb on - strandat 5036.556 kb on + strandat 5036.556 kb on + strandat 5036.557 kb on - strandat 5036.557 kb on - strandat 5036.557 kb on - strandat 5036.559 kb on - strandat 5036.559 kb on - strandat 5036.559 kb on - strandat 5036.559 kb on - strandat 5036.585 kb on + strandat 5036.586 kb on - strandat 5036.633 kb on + strand, within Echvi_4209at 5036.733 kb on - strand, within Echvi_4209at 5036.765 kb on + strand, within Echvi_4209at 5036.766 kb on - strand, within Echvi_4209at 5036.866 kb on + strand, within Echvi_4209at 5036.867 kb on - strand, within Echvi_4209at 5036.867 kb on - strand, within Echvi_4209at 5036.916 kb on - strand, within Echvi_4209at 5036.916 kb on - strand, within Echvi_4209at 5036.985 kb on + strand, within Echvi_4209at 5036.985 kb on + strand, within Echvi_4209at 5036.991 kb on + strand, within Echvi_4209at 5036.991 kb on + strand, within Echvi_4209at 5036.991 kb on + strand, within Echvi_4209at 5036.997 kb on + strand, within Echvi_4209at 5036.997 kb on + strand, within Echvi_4209at 5037.074 kb on + strand, within Echvi_4209at 5037.074 kb on + strand, within Echvi_4209at 5037.074 kb on + strand, within Echvi_4209at 5037.074 kb on + strand, within Echvi_4209at 5037.075 kb on - strand, within Echvi_4209at 5037.169 kb on + strandat 5037.170 kb on - strandat 5037.190 kb on + strandat 5037.190 kb on + strandat 5037.191 kb on - strandat 5037.191 kb on - strandat 5037.191 kb on - strandat 5037.219 kb on + strandat 5037.245 kb on + strandat 5037.246 kb on - strandat 5037.277 kb on + strandat 5037.411 kb on - strand, within Echvi_4210at 5037.442 kb on + strand, within Echvi_4210at 5037.443 kb on - strand, within Echvi_4210at 5037.526 kb on + strand, within Echvi_4210at 5037.526 kb on + strand, within Echvi_4210at 5037.573 kb on + strand, within Echvi_4210at 5037.573 kb on + strand, within Echvi_4210at 5037.573 kb on + strand, within Echvi_4210at 5037.585 kb on + strand, within Echvi_4210at 5037.585 kb on + strand, within Echvi_4210at 5037.746 kb on + strand, within Echvi_4210at 5037.746 kb on + strand, within Echvi_4210at 5037.747 kb on - strand, within Echvi_4210at 5037.758 kb on + strand, within Echvi_4210at 5037.758 kb on + strand, within Echvi_4210at 5037.759 kb on - strand, within Echvi_4210at 5037.759 kb on - strand, within Echvi_4210at 5037.759 kb on - strand, within Echvi_4210at 5037.759 kb on - strand, within Echvi_4210at 5037.835 kb on + strand, within Echvi_4210at 5037.835 kb on + strand, within Echvi_4210at 5037.835 kb on + strand, within Echvi_4210at 5037.836 kb on - strand, within Echvi_4210at 5037.836 kb on - strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.837 kb on + strand, within Echvi_4210at 5037.838 kb on - strand, within Echvi_4210at 5037.838 kb on - strand, within Echvi_4210at 5037.838 kb on - strand, within Echvi_4210at 5037.838 kb on - strand, within Echvi_4210at 5037.838 kb on - strand, within Echvi_4210at 5037.854 kb on + strand, within Echvi_4210at 5037.854 kb on + strand, within Echvi_4210at 5037.854 kb on + strand, within Echvi_4210at 5037.922 kb on + strand, within Echvi_4210at 5037.923 kb on - strand, within Echvi_4210at 5037.943 kb on + strand, within Echvi_4210at 5037.943 kb on + strand, within Echvi_4210at 5038.030 kb on + strand, within Echvi_4210at 5038.035 kb on + strand, within Echvi_4210at 5038.035 kb on + strand, within Echvi_4210at 5038.035 kb on + strand, within Echvi_4210at 5038.035 kb on + strand, within Echvi_4210at 5038.035 kb on + strand, within Echvi_4210at 5038.036 kb on - strand, within Echvi_4210at 5038.056 kb on + strand, within Echvi_4210at 5038.068 kb on + strand, within Echvi_4210at 5038.069 kb on - strand, within Echvi_4210at 5038.102 kb on - strand, within Echvi_4210at 5038.153 kb on - strand, within Echvi_4210at 5038.157 kb on - strand, within Echvi_4210at 5038.157 kb on - strand, within Echvi_4210at 5038.168 kb on + strand, within Echvi_4210at 5038.168 kb on + strand, within Echvi_4210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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5,035,552 + Echvi_4208 0.28 +0.4
5,035,561 + Echvi_4208 0.28 +0.6
5,035,562 - Echvi_4208 0.29 -1.2
5,035,562 - Echvi_4208 0.29 -0.2
5,035,562 - Echvi_4208 0.29 -1.6
5,035,577 + Echvi_4208 0.30 -0.6
5,035,578 - Echvi_4208 0.30 -0.3
5,035,658 + Echvi_4208 0.36 -1.4
5,035,684 + Echvi_4208 0.37 +0.6
5,035,748 + Echvi_4208 0.42 -1.3
5,035,749 - Echvi_4208 0.42 +0.9
5,035,749 - Echvi_4208 0.42 +0.2
5,035,887 + Echvi_4208 0.52 -0.4
5,035,970 - Echvi_4208 0.58 +2.2
5,036,002 - Echvi_4208 0.60 -0.4
5,036,075 + Echvi_4208 0.66 -0.1
5,036,075 + Echvi_4208 0.66 +0.3
5,036,114 - Echvi_4208 0.69 +0.6
5,036,185 + Echvi_4208 0.74 +0.5
5,036,186 - Echvi_4208 0.74 -2.9
5,036,186 - Echvi_4208 0.74 +0.6
5,036,188 + Echvi_4208 0.74 -0.4
5,036,188 + +3.8
5,036,188 + Echvi_4208 0.74 +1.2
5,036,188 + Echvi_4208 0.74 +0.2
5,036,189 - Echvi_4208 0.74 -0.1
5,036,189 - Echvi_4208 0.74 -0.1
5,036,189 - Echvi_4208 0.74 +1.1
5,036,281 + Echvi_4208 0.81 -0.2
5,036,350 + Echvi_4208 0.86 -0.3
5,036,356 - Echvi_4208 0.86 -0.1
5,036,395 + Echvi_4208 0.89 +0.3
5,036,396 - Echvi_4208 0.89 +0.6
5,036,396 - Echvi_4208 0.89 -1.8
5,036,406 + Echvi_4208 0.90 -0.2
5,036,407 - Echvi_4208 0.90 +0.7
5,036,407 - Echvi_4208 0.90 +0.7
5,036,417 - -0.6
5,036,417 - -0.6
5,036,434 - -0.6
5,036,448 - +0.6
5,036,458 - -1.0
5,036,479 + +0.6
5,036,479 + -0.4
5,036,480 - -0.1
5,036,480 - -0.7
5,036,482 + +0.3
5,036,503 + -0.3
5,036,503 + -0.9
5,036,504 - +0.2
5,036,504 - -0.9
5,036,504 - +0.8
5,036,506 - -0.8
5,036,509 - +0.6
5,036,556 + -0.5
5,036,556 + -0.0
5,036,557 - -0.1
5,036,557 - +0.2
5,036,557 - -1.4
5,036,559 - -0.4
5,036,559 - +0.8
5,036,559 - +0.3
5,036,559 - -1.4
5,036,585 + -0.1
5,036,586 - -0.1
5,036,633 + Echvi_4209 0.14 +0.2
5,036,733 - Echvi_4209 0.29 +0.9
5,036,765 + Echvi_4209 0.33 +1.0
5,036,766 - Echvi_4209 0.34 -1.7
5,036,866 + Echvi_4209 0.49 +1.0
5,036,867 - Echvi_4209 0.49 -1.7
5,036,867 - Echvi_4209 0.49 +1.0
5,036,916 - Echvi_4209 0.56 +1.3
5,036,916 - Echvi_4209 0.56 -0.7
5,036,985 + Echvi_4209 0.67 +0.1
5,036,985 + Echvi_4209 0.67 +1.4
5,036,991 + Echvi_4209 0.67 +0.6
5,036,991 + Echvi_4209 0.67 +1.1
5,036,991 + Echvi_4209 0.67 +0.3
5,036,997 + Echvi_4209 0.68 +0.5
5,036,997 + Echvi_4209 0.68 -0.6
5,037,074 + Echvi_4209 0.80 +0.4
5,037,074 + Echvi_4209 0.80 -0.5
5,037,074 + Echvi_4209 0.80 -0.2
5,037,074 + Echvi_4209 0.80 +0.2
5,037,075 - Echvi_4209 0.80 +0.7
5,037,169 + +0.1
5,037,170 - -0.5
5,037,190 + -0.0
5,037,190 + +0.7
5,037,191 - -0.3
5,037,191 - +0.5
5,037,191 - -0.8
5,037,219 + +0.8
5,037,245 + +0.5
5,037,246 - +0.1
5,037,277 + +0.7
5,037,411 - Echvi_4210 0.12 +0.2
5,037,442 + Echvi_4210 0.14 -0.2
5,037,443 - Echvi_4210 0.14 -0.4
5,037,526 + Echvi_4210 0.21 -0.5
5,037,526 + Echvi_4210 0.21 -0.5
5,037,573 + Echvi_4210 0.26 -1.1
5,037,573 + Echvi_4210 0.26 -0.1
5,037,573 + Echvi_4210 0.26 +0.5
5,037,585 + Echvi_4210 0.27 -0.4
5,037,585 + Echvi_4210 0.27 -0.0
5,037,746 + Echvi_4210 0.40 -0.6
5,037,746 + Echvi_4210 0.40 +0.4
5,037,747 - Echvi_4210 0.40 -0.5
5,037,758 + Echvi_4210 0.41 -1.7
5,037,758 + Echvi_4210 0.41 +0.2
5,037,759 - Echvi_4210 0.41 +0.3
5,037,759 - Echvi_4210 0.41 -0.4
5,037,759 - Echvi_4210 0.41 -0.7
5,037,759 - Echvi_4210 0.41 +0.7
5,037,835 + Echvi_4210 0.48 +0.7
5,037,835 + Echvi_4210 0.48 -1.9
5,037,835 + Echvi_4210 0.48 +1.6
5,037,836 - Echvi_4210 0.48 +0.5
5,037,836 - Echvi_4210 0.48 -0.4
5,037,837 + Echvi_4210 0.48 -0.3
5,037,837 + Echvi_4210 0.48 +0.3
5,037,837 + Echvi_4210 0.48 -1.5
5,037,837 + Echvi_4210 0.48 +0.3
5,037,837 + Echvi_4210 0.48 -0.2
5,037,837 + Echvi_4210 0.48 +0.5
5,037,837 + Echvi_4210 0.48 -0.3
5,037,838 - Echvi_4210 0.48 -0.7
5,037,838 - Echvi_4210 0.48 +0.2
5,037,838 - Echvi_4210 0.48 -0.2
5,037,838 - Echvi_4210 0.48 -0.1
5,037,838 - Echvi_4210 0.48 +0.0
5,037,854 + Echvi_4210 0.50 -0.2
5,037,854 + Echvi_4210 0.50 +0.0
5,037,854 + Echvi_4210 0.50 -0.2
5,037,922 + Echvi_4210 0.55 -0.1
5,037,923 - Echvi_4210 0.56 +0.1
5,037,943 + Echvi_4210 0.57 +0.1
5,037,943 + Echvi_4210 0.57 -0.7
5,038,030 + Echvi_4210 0.65 +0.1
5,038,035 + Echvi_4210 0.65 +0.3
5,038,035 + Echvi_4210 0.65 +0.1
5,038,035 + Echvi_4210 0.65 -0.7
5,038,035 + Echvi_4210 0.65 +0.8
5,038,035 + Echvi_4210 0.65 -0.1
5,038,036 - Echvi_4210 0.65 +2.6
5,038,056 + Echvi_4210 0.67 -0.4
5,038,068 + Echvi_4210 0.68 -0.2
5,038,069 - Echvi_4210 0.68 -0.8
5,038,102 - Echvi_4210 0.71 -0.3
5,038,153 - Echvi_4210 0.75 +0.2
5,038,157 - Echvi_4210 0.76 -1.4
5,038,157 - Echvi_4210 0.76 +0.1
5,038,168 + Echvi_4210 0.77 -0.1
5,038,168 + Echvi_4210 0.77 -0.7

Or see this region's nucleotide sequence