Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3968

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3967 and Echvi_3968 are separated by 658 nucleotidesEchvi_3968 and Echvi_3969 overlap by 4 nucleotides Echvi_3967: Echvi_3967 - 16S, at 4,754,748 to 4,756,159 _3967 Echvi_3968: Echvi_3968 - Domain of Unknown Function (DUF1080)., at 4,756,818 to 4,757,426 _3968 Echvi_3969: Echvi_3969 - Domain of Unknown Function (DUF1080)., at 4,757,423 to 4,758,202 _3969 Position (kb) 4756 4757 4758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4756.704 kb on - strandat 4756.705 kb on + strandat 4756.706 kb on - strandat 4756.733 kb on - strandat 4756.803 kb on + strandat 4756.812 kb on + strandat 4756.813 kb on - strandat 4756.835 kb on + strandat 4756.856 kb on + strandat 4756.889 kb on + strand, within Echvi_3968at 4756.974 kb on + strand, within Echvi_3968at 4757.068 kb on + strand, within Echvi_3968at 4757.069 kb on - strand, within Echvi_3968at 4757.081 kb on + strand, within Echvi_3968at 4757.081 kb on + strand, within Echvi_3968at 4757.101 kb on - strand, within Echvi_3968at 4757.106 kb on + strand, within Echvi_3968at 4757.107 kb on - strand, within Echvi_3968at 4757.107 kb on - strand, within Echvi_3968at 4757.107 kb on - strand, within Echvi_3968at 4757.127 kb on - strand, within Echvi_3968at 4757.196 kb on + strand, within Echvi_3968at 4757.197 kb on - strand, within Echvi_3968at 4757.210 kb on + strand, within Echvi_3968at 4757.213 kb on - strand, within Echvi_3968at 4757.268 kb on + strand, within Echvi_3968at 4757.269 kb on - strand, within Echvi_3968at 4757.269 kb on - strand, within Echvi_3968at 4757.269 kb on - strand, within Echvi_3968at 4757.271 kb on + strand, within Echvi_3968at 4757.272 kb on - strand, within Echvi_3968at 4757.272 kb on - strand, within Echvi_3968at 4757.272 kb on - strand, within Echvi_3968at 4757.305 kb on + strand, within Echvi_3968at 4757.306 kb on - strand, within Echvi_3968at 4757.310 kb on - strand, within Echvi_3968at 4757.375 kb on + strandat 4757.382 kb on + strandat 4757.385 kb on + strandat 4757.386 kb on - strandat 4757.386 kb on - strandat 4757.386 kb on - strandat 4757.390 kb on + strandat 4757.415 kb on + strandat 4757.419 kb on + strandat 4757.420 kb on - strandat 4757.420 kb on - strandat 4757.420 kb on - strandat 4757.420 kb on - strandat 4757.451 kb on + strandat 4757.451 kb on + strandat 4757.452 kb on - strandat 4757.590 kb on + strand, within Echvi_3969at 4757.596 kb on + strand, within Echvi_3969at 4757.596 kb on + strand, within Echvi_3969at 4757.597 kb on - strand, within Echvi_3969at 4757.601 kb on + strand, within Echvi_3969at 4757.602 kb on - strand, within Echvi_3969at 4757.604 kb on + strand, within Echvi_3969at 4757.605 kb on - strand, within Echvi_3969at 4757.605 kb on - strand, within Echvi_3969at 4757.641 kb on + strand, within Echvi_3969at 4757.687 kb on - strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.726 kb on + strand, within Echvi_3969at 4757.764 kb on - strand, within Echvi_3969at 4757.776 kb on + strand, within Echvi_3969at 4757.779 kb on + strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.781 kb on + strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.798 kb on - strand, within Echvi_3969at 4757.812 kb on + strand, within Echvi_3969at 4757.812 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.818 kb on - strand, within Echvi_3969at 4757.822 kb on + strand, within Echvi_3969at 4757.822 kb on + strand, within Echvi_3969at 4757.823 kb on - strand, within Echvi_3969at 4757.823 kb on - strand, within Echvi_3969at 4757.824 kb on + strand, within Echvi_3969at 4757.825 kb on - strand, within Echvi_3969at 4757.846 kb on + strand, within Echvi_3969at 4757.938 kb on + strand, within Echvi_3969at 4757.939 kb on - strand, within Echvi_3969at 4757.939 kb on - strand, within Echvi_3969at 4757.944 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.989 kb on - strand, within Echvi_3969at 4757.989 kb on - strand, within Echvi_3969at 4758.058 kb on + strand, within Echvi_3969at 4758.058 kb on + strand, within Echvi_3969at 4758.064 kb on + strand, within Echvi_3969at 4758.065 kb on - strand, within Echvi_3969at 4758.220 kb on - strandat 4758.225 kb on - strandat 4758.225 kb on - strandat 4758.243 kb on + strandat 4758.253 kb on + strandat 4758.274 kb on + strandat 4758.413 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
remove
4,756,704 - +0.2
4,756,705 + -1.0
4,756,706 - +0.4
4,756,733 - -0.1
4,756,803 + +0.0
4,756,812 + +0.3
4,756,813 - +0.1
4,756,835 + +1.0
4,756,856 + +0.2
4,756,889 + Echvi_3968 0.12 +2.5
4,756,974 + Echvi_3968 0.26 +0.2
4,757,068 + Echvi_3968 0.41 +0.0
4,757,069 - Echvi_3968 0.41 -0.7
4,757,081 + Echvi_3968 0.43 +0.2
4,757,081 + Echvi_3968 0.43 +0.0
4,757,101 - Echvi_3968 0.46 -0.5
4,757,106 + Echvi_3968 0.47 -1.6
4,757,107 - Echvi_3968 0.47 +0.6
4,757,107 - Echvi_3968 0.47 -0.8
4,757,107 - Echvi_3968 0.47 -0.5
4,757,127 - Echvi_3968 0.51 -0.9
4,757,196 + Echvi_3968 0.62 +0.2
4,757,197 - Echvi_3968 0.62 -0.9
4,757,210 + Echvi_3968 0.64 -0.6
4,757,213 - Echvi_3968 0.65 -0.9
4,757,268 + Echvi_3968 0.74 -0.8
4,757,269 - Echvi_3968 0.74 -1.2
4,757,269 - Echvi_3968 0.74 -1.5
4,757,269 - Echvi_3968 0.74 +0.3
4,757,271 + Echvi_3968 0.74 -0.5
4,757,272 - Echvi_3968 0.75 -1.7
4,757,272 - Echvi_3968 0.75 -0.9
4,757,272 - Echvi_3968 0.75 +0.1
4,757,305 + Echvi_3968 0.80 -0.8
4,757,306 - Echvi_3968 0.80 +1.4
4,757,310 - Echvi_3968 0.81 -0.4
4,757,375 + +0.4
4,757,382 + +0.1
4,757,385 + +0.8
4,757,386 - -0.5
4,757,386 - +0.8
4,757,386 - +1.6
4,757,390 + +0.3
4,757,415 + +0.4
4,757,419 + +0.1
4,757,420 - -0.3
4,757,420 - -0.5
4,757,420 - -0.5
4,757,420 - +0.1
4,757,451 + +0.3
4,757,451 + +0.8
4,757,452 - -0.1
4,757,590 + Echvi_3969 0.21 +0.4
4,757,596 + Echvi_3969 0.22 +0.1
4,757,596 + Echvi_3969 0.22 +1.0
4,757,597 - Echvi_3969 0.22 -0.3
4,757,601 + Echvi_3969 0.23 +0.4
4,757,602 - Echvi_3969 0.23 -0.2
4,757,604 + Echvi_3969 0.23 -0.4
4,757,605 - Echvi_3969 0.23 +0.9
4,757,605 - Echvi_3969 0.23 +0.1
4,757,641 + Echvi_3969 0.28 +1.7
4,757,687 - Echvi_3969 0.34 +1.1
4,757,688 + Echvi_3969 0.34 +0.3
4,757,688 + Echvi_3969 0.34 -0.5
4,757,688 + Echvi_3969 0.34 +0.6
4,757,688 + Echvi_3969 0.34 +0.5
4,757,688 + Echvi_3969 0.34 +0.4
4,757,688 + Echvi_3969 0.34 +0.3
4,757,688 + Echvi_3969 0.34 -0.2
4,757,688 + Echvi_3969 0.34 -0.2
4,757,688 + Echvi_3969 0.34 -0.1
4,757,688 + Echvi_3969 0.34 -0.9
4,757,688 + Echvi_3969 0.34 +0.8
4,757,688 + Echvi_3969 0.34 -2.3
4,757,688 + Echvi_3969 0.34 +0.1
4,757,688 + Echvi_3969 0.34 +0.6
4,757,688 + Echvi_3969 0.34 +0.1
4,757,688 + Echvi_3969 0.34 -0.4
4,757,689 - Echvi_3969 0.34 -1.8
4,757,689 - Echvi_3969 0.34 +0.3
4,757,689 - Echvi_3969 0.34 -0.4
4,757,689 - Echvi_3969 0.34 -1.0
4,757,689 - Echvi_3969 0.34 +1.3
4,757,689 - Echvi_3969 0.34 -0.3
4,757,689 - Echvi_3969 0.34 +0.6
4,757,726 + Echvi_3969 0.39 -0.1
4,757,764 - Echvi_3969 0.44 -3.0
4,757,776 + Echvi_3969 0.45 +1.4
4,757,779 + Echvi_3969 0.46 +0.3
4,757,780 - Echvi_3969 0.46 -0.6
4,757,780 - Echvi_3969 0.46 +0.0
4,757,780 - Echvi_3969 0.46 -0.5
4,757,780 - Echvi_3969 0.46 +0.1
4,757,781 + Echvi_3969 0.46 +0.5
4,757,782 - Echvi_3969 0.46 +0.0
4,757,782 - Echvi_3969 0.46 +0.0
4,757,782 - Echvi_3969 0.46 +0.2
4,757,798 - Echvi_3969 0.48 +0.6
4,757,812 + Echvi_3969 0.50 -0.6
4,757,812 + Echvi_3969 0.50 +0.7
4,757,817 + Echvi_3969 0.51 -0.4
4,757,817 + Echvi_3969 0.51 +0.1
4,757,817 + Echvi_3969 0.51 -0.6
4,757,818 - Echvi_3969 0.51 +0.9
4,757,822 + Echvi_3969 0.51 +0.8
4,757,822 + Echvi_3969 0.51 -0.5
4,757,823 - Echvi_3969 0.51 -0.2
4,757,823 - Echvi_3969 0.51 +0.1
4,757,824 + Echvi_3969 0.51 -0.3
4,757,825 - Echvi_3969 0.52 +1.2
4,757,846 + Echvi_3969 0.54 +0.5
4,757,938 + Echvi_3969 0.66 -1.4
4,757,939 - Echvi_3969 0.66 -0.5
4,757,939 - Echvi_3969 0.66 -0.5
4,757,944 + Echvi_3969 0.67 +0.7
4,757,988 + Echvi_3969 0.72 +0.2
4,757,988 + Echvi_3969 0.72 +0.0
4,757,988 + Echvi_3969 0.72 -0.3
4,757,988 + Echvi_3969 0.72 +0.7
4,757,989 - Echvi_3969 0.73 +0.1
4,757,989 - Echvi_3969 0.73 -0.1
4,758,058 + Echvi_3969 0.81 +0.9
4,758,058 + Echvi_3969 0.81 +0.2
4,758,064 + Echvi_3969 0.82 -0.8
4,758,065 - Echvi_3969 0.82 -1.4
4,758,220 - +1.7
4,758,225 - -0.3
4,758,225 - +0.0
4,758,243 + +0.3
4,758,253 + +0.7
4,758,274 + -1.3
4,758,413 + -0.5

Or see this region's nucleotide sequence