Experiment: m.b. Thallium(I) acetate 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3509 and Echvi_3510 are separated by 167 nucleotides Echvi_3510 and Echvi_3511 are separated by 3 nucleotides Echvi_3511 and Echvi_3512 are separated by 97 nucleotides
Echvi_3509: Echvi_3509 - tRNA modification GTPase TrmE, at 4,158,855 to 4,160,237
_3509
Echvi_3510: Echvi_3510 - Site-specific recombinase XerD, at 4,160,405 to 4,161,547
_3510
Echvi_3511: Echvi_3511 - hypothetical protein, at 4,161,551 to 4,162,408
_3511
Echvi_3512: Echvi_3512 - DNA binding domain, excisionase family, at 4,162,506 to 4,162,784
_3512
Position (kb)
4160
4161
4162 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4159.475 kb on - strand, within Echvi_3509 at 4159.869 kb on - strand, within Echvi_3509 at 4160.288 kb on - strand at 4160.396 kb on - strand at 4160.449 kb on - strand at 4160.465 kb on + strand at 4160.465 kb on + strand at 4160.465 kb on + strand at 4160.468 kb on + strand at 4160.468 kb on + strand at 4160.470 kb on + strand at 4160.471 kb on - strand at 4160.563 kb on + strand, within Echvi_3510 at 4160.663 kb on - strand, within Echvi_3510 at 4160.663 kb on - strand, within Echvi_3510 at 4160.664 kb on + strand, within Echvi_3510 at 4160.665 kb on - strand, within Echvi_3510 at 4160.665 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.739 kb on - strand, within Echvi_3510 at 4160.739 kb on - strand, within Echvi_3510 at 4160.815 kb on + strand, within Echvi_3510 at 4160.822 kb on - strand, within Echvi_3510 at 4160.822 kb on - strand, within Echvi_3510 at 4160.897 kb on + strand, within Echvi_3510 at 4160.951 kb on + strand, within Echvi_3510 at 4160.951 kb on + strand, within Echvi_3510 at 4160.952 kb on - strand, within Echvi_3510 at 4160.956 kb on - strand, within Echvi_3510 at 4160.967 kb on - strand, within Echvi_3510 at 4161.014 kb on + strand at 4161.014 kb on + strand, within Echvi_3510 at 4161.033 kb on + strand, within Echvi_3510 at 4161.058 kb on + strand, within Echvi_3510 at 4161.058 kb on + strand, within Echvi_3510 at 4161.062 kb on + strand, within Echvi_3510 at 4161.109 kb on + strand, within Echvi_3510 at 4161.109 kb on + strand, within Echvi_3510 at 4161.109 kb on + strand, within Echvi_3510 at 4161.110 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.163 kb on + strand, within Echvi_3510 at 4161.212 kb on + strand, within Echvi_3510 at 4161.213 kb on - strand, within Echvi_3510 at 4161.216 kb on + strand, within Echvi_3510 at 4161.216 kb on + strand, within Echvi_3510 at 4161.217 kb on - strand, within Echvi_3510 at 4161.217 kb on - strand, within Echvi_3510 at 4161.217 kb on - strand, within Echvi_3510 at 4161.218 kb on + strand, within Echvi_3510 at 4161.281 kb on + strand, within Echvi_3510 at 4161.289 kb on + strand, within Echvi_3510 at 4161.293 kb on + strand, within Echvi_3510 at 4161.293 kb on + strand, within Echvi_3510 at 4161.294 kb on - strand, within Echvi_3510 at 4161.306 kb on - strand, within Echvi_3510 at 4161.306 kb on - strand, within Echvi_3510 at 4161.308 kb on - strand, within Echvi_3510 at 4161.310 kb on + strand, within Echvi_3510 at 4161.417 kb on + strand, within Echvi_3510 at 4161.418 kb on - strand, within Echvi_3510 at 4161.418 kb on - strand, within Echvi_3510 at 4161.438 kb on + strand at 4161.445 kb on + strand at 4161.446 kb on - strand at 4161.446 kb on - strand at 4161.446 kb on - strand at 4161.470 kb on + strand at 4161.475 kb on + strand at 4161.511 kb on + strand at 4161.512 kb on - strand at 4161.513 kb on + strand at 4161.514 kb on - strand at 4161.514 kb on - strand at 4161.531 kb on + strand at 4161.545 kb on + strand at 4161.545 kb on + strand at 4161.580 kb on - strand at 4161.597 kb on + strand at 4161.597 kb on + strand at 4161.615 kb on - strand at 4161.625 kb on - strand at 4161.628 kb on + strand at 4161.635 kb on + strand at 4161.647 kb on - strand, within Echvi_3511 at 4161.655 kb on + strand, within Echvi_3511 at 4161.656 kb on - strand, within Echvi_3511 at 4161.656 kb on - strand, within Echvi_3511 at 4161.659 kb on + strand, within Echvi_3511 at 4161.696 kb on - strand, within Echvi_3511 at 4161.701 kb on - strand, within Echvi_3511 at 4161.744 kb on - strand, within Echvi_3511 at 4161.744 kb on - strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.751 kb on + strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.919 kb on + strand, within Echvi_3511 at 4162.009 kb on + strand, within Echvi_3511 at 4162.094 kb on + strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.212 kb on - strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.243 kb on + strand, within Echvi_3511 at 4162.244 kb on - strand, within Echvi_3511 at 4162.313 kb on + strand, within Echvi_3511 at 4162.333 kb on + strand at 4162.333 kb on + strand at 4162.334 kb on - strand at 4162.334 kb on - strand at 4162.340 kb on + strand at 4162.358 kb on + strand at 4162.359 kb on - strand at 4162.359 kb on - strand at 4162.361 kb on - strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.467 kb on + strand at 4162.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml remove 4,159,475 - Echvi_3509 0.45 -0.9 4,159,869 - Echvi_3509 0.73 -1.1 4,160,288 - +0.4 4,160,396 - -0.7 4,160,449 - -0.9 4,160,465 + +0.3 4,160,465 + +0.0 4,160,465 + +1.3 4,160,468 + +0.3 4,160,468 + -0.1 4,160,470 + +0.3 4,160,471 - -0.0 4,160,563 + Echvi_3510 0.14 +0.9 4,160,663 - Echvi_3510 0.23 +1.9 4,160,663 - Echvi_3510 0.23 -0.7 4,160,664 + Echvi_3510 0.23 +0.3 4,160,665 - Echvi_3510 0.23 +0.9 4,160,665 - Echvi_3510 0.23 +1.5 4,160,697 - Echvi_3510 0.26 -0.8 4,160,697 - Echvi_3510 0.26 -1.2 4,160,697 - Echvi_3510 0.26 +0.5 4,160,697 - Echvi_3510 0.26 -0.0 4,160,697 - Echvi_3510 0.26 +1.5 4,160,697 - Echvi_3510 0.26 -0.2 4,160,739 - Echvi_3510 0.29 +0.2 4,160,739 - Echvi_3510 0.29 -0.0 4,160,815 + Echvi_3510 0.36 +0.1 4,160,822 - Echvi_3510 0.36 +0.8 4,160,822 - Echvi_3510 0.36 -0.1 4,160,897 + Echvi_3510 0.43 +0.4 4,160,951 + Echvi_3510 0.48 -0.7 4,160,951 + Echvi_3510 0.48 -0.6 4,160,952 - Echvi_3510 0.48 +1.0 4,160,956 - Echvi_3510 0.48 -1.3 4,160,967 - Echvi_3510 0.49 -1.2 4,161,014 + -0.1 4,161,014 + Echvi_3510 0.53 +1.2 4,161,033 + Echvi_3510 0.55 +0.6 4,161,058 + Echvi_3510 0.57 +0.5 4,161,058 + Echvi_3510 0.57 -2.7 4,161,062 + Echvi_3510 0.57 -0.6 4,161,109 + Echvi_3510 0.62 +0.3 4,161,109 + Echvi_3510 0.62 +0.3 4,161,109 + Echvi_3510 0.62 -0.4 4,161,110 - Echvi_3510 0.62 -0.9 4,161,134 - Echvi_3510 0.64 +0.5 4,161,134 - Echvi_3510 0.64 -1.3 4,161,134 - Echvi_3510 0.64 +1.5 4,161,134 - Echvi_3510 0.64 -1.5 4,161,134 - Echvi_3510 0.64 +0.1 4,161,163 + Echvi_3510 0.66 +0.2 4,161,212 + Echvi_3510 0.71 -2.2 4,161,213 - Echvi_3510 0.71 -0.2 4,161,216 + Echvi_3510 0.71 +0.1 4,161,216 + Echvi_3510 0.71 +0.4 4,161,217 - Echvi_3510 0.71 -0.7 4,161,217 - Echvi_3510 0.71 +0.6 4,161,217 - Echvi_3510 0.71 +1.5 4,161,218 + Echvi_3510 0.71 -1.1 4,161,281 + Echvi_3510 0.77 -0.3 4,161,289 + Echvi_3510 0.77 -0.3 4,161,293 + Echvi_3510 0.78 -0.2 4,161,293 + Echvi_3510 0.78 -0.7 4,161,294 - Echvi_3510 0.78 +0.3 4,161,306 - Echvi_3510 0.79 -1.0 4,161,306 - Echvi_3510 0.79 -0.8 4,161,308 - Echvi_3510 0.79 -0.5 4,161,310 + Echvi_3510 0.79 -0.9 4,161,417 + Echvi_3510 0.89 -1.1 4,161,418 - Echvi_3510 0.89 -0.7 4,161,418 - Echvi_3510 0.89 -0.7 4,161,438 + -1.0 4,161,445 + -0.1 4,161,446 - -0.9 4,161,446 - -0.5 4,161,446 - +0.1 4,161,470 + -0.1 4,161,475 + -0.7 4,161,511 + +0.3 4,161,512 - -0.1 4,161,513 + +0.0 4,161,514 - +1.2 4,161,514 - +0.2 4,161,531 + -0.6 4,161,545 + +0.2 4,161,545 + -0.0 4,161,580 - -0.4 4,161,597 + +0.6 4,161,597 + -0.4 4,161,615 - -1.1 4,161,625 - +0.1 4,161,628 + -0.5 4,161,635 + -0.9 4,161,647 - Echvi_3511 0.11 -0.3 4,161,655 + Echvi_3511 0.12 +0.0 4,161,656 - Echvi_3511 0.12 -0.6 4,161,656 - Echvi_3511 0.12 -0.3 4,161,659 + Echvi_3511 0.13 -1.8 4,161,696 - Echvi_3511 0.17 +1.0 4,161,701 - Echvi_3511 0.17 -1.0 4,161,744 - Echvi_3511 0.22 +0.5 4,161,744 - Echvi_3511 0.22 +0.8 4,161,745 + Echvi_3511 0.23 -0.5 4,161,745 + Echvi_3511 0.23 -0.1 4,161,745 + Echvi_3511 0.23 -0.8 4,161,745 + Echvi_3511 0.23 -0.3 4,161,746 - Echvi_3511 0.23 -0.7 4,161,746 - Echvi_3511 0.23 -0.9 4,161,746 - Echvi_3511 0.23 -1.0 4,161,746 - Echvi_3511 0.23 -0.4 4,161,751 + Echvi_3511 0.23 +0.7 4,161,887 - Echvi_3511 0.39 +0.4 4,161,887 - Echvi_3511 0.39 -0.6 4,161,887 - Echvi_3511 0.39 +1.4 4,161,888 + Echvi_3511 0.39 +0.6 4,161,888 + Echvi_3511 0.39 +0.7 4,161,888 + Echvi_3511 0.39 -0.2 4,161,888 + Echvi_3511 0.39 +0.1 4,161,889 - Echvi_3511 0.39 +0.2 4,161,889 - Echvi_3511 0.39 +0.1 4,161,889 - Echvi_3511 0.39 +0.2 4,161,889 - Echvi_3511 0.39 -0.5 4,161,889 - Echvi_3511 0.39 +0.0 4,161,919 + Echvi_3511 0.43 +2.4 4,162,009 + Echvi_3511 0.53 +0.6 4,162,094 + Echvi_3511 0.63 -0.1 4,162,181 - Echvi_3511 0.73 -0.2 4,162,181 - Echvi_3511 0.73 -0.7 4,162,212 - Echvi_3511 0.77 +0.3 4,162,235 + Echvi_3511 0.80 +0.5 4,162,235 + Echvi_3511 0.80 +1.1 4,162,235 + Echvi_3511 0.80 +0.1 4,162,236 - Echvi_3511 0.80 +0.2 4,162,236 - Echvi_3511 0.80 -0.1 4,162,236 - Echvi_3511 0.80 -0.3 4,162,236 - Echvi_3511 0.80 -0.9 4,162,236 - Echvi_3511 0.80 +0.0 4,162,236 - Echvi_3511 0.80 -0.9 4,162,243 + Echvi_3511 0.81 +1.1 4,162,244 - Echvi_3511 0.81 -2.6 4,162,313 + Echvi_3511 0.89 +0.4 4,162,333 + +0.5 4,162,333 + -0.8 4,162,334 - -0.8 4,162,334 - +0.1 4,162,340 + +1.5 4,162,358 + +0.1 4,162,359 - +1.5 4,162,359 - +0.2 4,162,361 - +0.1 4,162,401 + -0.9 4,162,401 + -0.3 4,162,401 + +0.9 4,162,402 - +0.3 4,162,402 - +1.7 4,162,402 - +1.7 4,162,467 + -0.3 4,162,520 + +0.9
Or see this region's nucleotide sequence