Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3437

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3436 and Echvi_3437 are separated by 83 nucleotidesEchvi_3437 and Echvi_3438 are separated by 194 nucleotides Echvi_3436: Echvi_3436 - polyribonucleotide nucleotidyltransferase, at 4,065,069 to 4,067,210 _3436 Echvi_3437: Echvi_3437 - RNA polymerase sigma factor, sigma-70 family, at 4,067,294 to 4,068,157 _3437 Echvi_3438: Echvi_3438 - thioredoxin-disulfide reductase, at 4,068,352 to 4,069,296 _3438 Position (kb) 4067 4068 4069Strain fitness (log2 ratio) -1 0 1at 4066.968 kb on + strand, within Echvi_3436at 4067.259 kb on + strandat 4067.261 kb on + strandat 4067.261 kb on + strandat 4067.265 kb on + strandat 4068.206 kb on - strandat 4068.211 kb on - strandat 4068.212 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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4,066,968 + Echvi_3436 0.89 -1.1
4,067,259 + -0.3
4,067,261 + +0.0
4,067,261 + +0.7
4,067,265 + -0.2
4,068,206 - +0.5
4,068,211 - -1.6
4,068,212 + -1.3

Or see this region's nucleotide sequence