Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2941

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2940 and Echvi_2941 are separated by 88 nucleotidesEchvi_2941 and Echvi_2942 are separated by 164 nucleotides Echvi_2940: Echvi_2940 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,518,236 to 3,518,991 _2940 Echvi_2941: Echvi_2941 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 3,519,080 to 3,520,426 _2941 Echvi_2942: Echvi_2942 - AraC-type DNA-binding domain-containing proteins, at 3,520,591 to 3,521,463 _2942 Position (kb) 3519 3520 3521Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3518.086 kb on + strandat 3518.086 kb on + strandat 3518.087 kb on - strandat 3518.087 kb on - strandat 3518.092 kb on - strandat 3518.094 kb on + strandat 3518.188 kb on - strandat 3518.216 kb on - strandat 3518.273 kb on + strandat 3518.310 kb on + strandat 3518.311 kb on - strandat 3518.411 kb on + strand, within Echvi_2940at 3518.445 kb on + strand, within Echvi_2940at 3518.598 kb on + strand, within Echvi_2940at 3518.652 kb on + strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.679 kb on - strand, within Echvi_2940at 3518.747 kb on - strand, within Echvi_2940at 3518.753 kb on - strand, within Echvi_2940at 3518.835 kb on + strand, within Echvi_2940at 3518.836 kb on - strand, within Echvi_2940at 3518.888 kb on + strand, within Echvi_2940at 3518.889 kb on - strand, within Echvi_2940at 3519.009 kb on + strandat 3519.009 kb on + strandat 3519.013 kb on + strandat 3519.016 kb on - strandat 3519.129 kb on + strandat 3519.178 kb on + strandat 3519.209 kb on + strandat 3519.246 kb on + strand, within Echvi_2941at 3519.247 kb on - strand, within Echvi_2941at 3519.286 kb on + strand, within Echvi_2941at 3519.286 kb on + strand, within Echvi_2941at 3519.287 kb on - strand, within Echvi_2941at 3519.287 kb on - strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.289 kb on - strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.312 kb on - strand, within Echvi_2941at 3519.316 kb on - strand, within Echvi_2941at 3519.316 kb on - strand, within Echvi_2941at 3519.316 kb on - strand, within Echvi_2941at 3519.382 kb on + strand, within Echvi_2941at 3519.511 kb on + strand, within Echvi_2941at 3519.512 kb on - strand, within Echvi_2941at 3519.512 kb on - strand, within Echvi_2941at 3519.530 kb on + strand, within Echvi_2941at 3519.531 kb on - strand, within Echvi_2941at 3519.538 kb on + strand, within Echvi_2941at 3519.630 kb on - strand, within Echvi_2941at 3519.663 kb on + strand, within Echvi_2941at 3519.663 kb on + strand, within Echvi_2941at 3519.664 kb on - strand, within Echvi_2941at 3519.746 kb on - strand, within Echvi_2941at 3519.854 kb on + strand, within Echvi_2941at 3519.939 kb on + strand, within Echvi_2941at 3519.939 kb on + strand, within Echvi_2941at 3519.939 kb on + strand, within Echvi_2941at 3519.940 kb on - strand, within Echvi_2941at 3519.940 kb on - strand, within Echvi_2941at 3519.940 kb on - strand, within Echvi_2941at 3519.962 kb on + strand, within Echvi_2941at 3519.963 kb on - strand, within Echvi_2941at 3520.023 kb on + strand, within Echvi_2941at 3520.024 kb on - strand, within Echvi_2941at 3520.024 kb on - strand, within Echvi_2941at 3520.024 kb on - strand, within Echvi_2941at 3520.044 kb on - strand, within Echvi_2941at 3520.067 kb on + strand, within Echvi_2941at 3520.067 kb on + strand, within Echvi_2941at 3520.097 kb on + strand, within Echvi_2941at 3520.098 kb on - strand, within Echvi_2941at 3520.165 kb on + strand, within Echvi_2941at 3520.169 kb on + strand, within Echvi_2941at 3520.169 kb on + strand, within Echvi_2941at 3520.169 kb on + strand, within Echvi_2941at 3520.170 kb on - strand, within Echvi_2941at 3520.170 kb on - strand, within Echvi_2941at 3520.226 kb on + strand, within Echvi_2941at 3520.231 kb on + strand, within Echvi_2941at 3520.232 kb on - strand, within Echvi_2941at 3520.284 kb on + strand, within Echvi_2941at 3520.284 kb on + strand, within Echvi_2941at 3520.285 kb on - strand, within Echvi_2941at 3520.395 kb on + strandat 3520.398 kb on - strandat 3520.638 kb on + strandat 3520.639 kb on - strandat 3520.749 kb on + strand, within Echvi_2942at 3520.750 kb on - strand, within Echvi_2942at 3520.752 kb on - strand, within Echvi_2942at 3520.781 kb on + strand, within Echvi_2942at 3520.782 kb on - strand, within Echvi_2942at 3520.878 kb on + strand, within Echvi_2942at 3521.034 kb on + strand, within Echvi_2942at 3521.034 kb on + strandat 3521.094 kb on - strand, within Echvi_2942at 3521.112 kb on + strand, within Echvi_2942at 3521.112 kb on + strand, within Echvi_2942at 3521.113 kb on - strand, within Echvi_2942at 3521.159 kb on - strand, within Echvi_2942at 3521.167 kb on - strand, within Echvi_2942at 3521.173 kb on - strand, within Echvi_2942at 3521.176 kb on - strand, within Echvi_2942at 3521.176 kb on - strand, within Echvi_2942at 3521.207 kb on + strand, within Echvi_2942at 3521.208 kb on - strand, within Echvi_2942at 3521.265 kb on + strand, within Echvi_2942at 3521.275 kb on + strand, within Echvi_2942at 3521.276 kb on - strand, within Echvi_2942at 3521.309 kb on - strand, within Echvi_2942at 3521.309 kb on - strand, within Echvi_2942at 3521.317 kb on - strand, within Echvi_2942at 3521.377 kb on - strandat 3521.377 kb on - strandat 3521.377 kb on - strandat 3521.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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3,518,086 + +2.0
3,518,086 + -1.4
3,518,087 - +1.8
3,518,087 - -1.7
3,518,092 - -1.2
3,518,094 + -0.5
3,518,188 - +0.9
3,518,216 - +0.1
3,518,273 + +0.5
3,518,310 + +1.3
3,518,311 - -1.2
3,518,411 + Echvi_2940 0.23 -1.2
3,518,445 + Echvi_2940 0.28 -0.1
3,518,598 + Echvi_2940 0.48 +0.4
3,518,652 + Echvi_2940 0.55 +0.6
3,518,653 - Echvi_2940 0.55 -1.0
3,518,653 - Echvi_2940 0.55 -0.5
3,518,653 - Echvi_2940 0.55 +0.4
3,518,655 - Echvi_2940 0.55 +0.6
3,518,655 - Echvi_2940 0.55 -0.7
3,518,655 - Echvi_2940 0.55 -1.3
3,518,679 - Echvi_2940 0.59 -0.6
3,518,747 - Echvi_2940 0.68 -0.7
3,518,753 - Echvi_2940 0.68 -0.0
3,518,835 + Echvi_2940 0.79 +0.5
3,518,836 - Echvi_2940 0.79 +0.1
3,518,888 + Echvi_2940 0.86 +0.7
3,518,889 - Echvi_2940 0.86 +0.5
3,519,009 + -0.5
3,519,009 + +0.6
3,519,013 + -1.1
3,519,016 - +0.6
3,519,129 + +0.2
3,519,178 + -0.7
3,519,209 + -0.5
3,519,246 + Echvi_2941 0.12 +0.2
3,519,247 - Echvi_2941 0.12 +0.3
3,519,286 + Echvi_2941 0.15 +0.7
3,519,286 + Echvi_2941 0.15 +0.3
3,519,287 - Echvi_2941 0.15 -1.6
3,519,287 - Echvi_2941 0.15 -0.0
3,519,288 + Echvi_2941 0.15 +0.2
3,519,288 + Echvi_2941 0.15 +1.7
3,519,288 + Echvi_2941 0.15 +0.2
3,519,288 + Echvi_2941 0.15 -0.3
3,519,288 + Echvi_2941 0.15 -0.7
3,519,288 + Echvi_2941 0.15 -1.3
3,519,289 - Echvi_2941 0.16 +0.9
3,519,311 + Echvi_2941 0.17 -1.5
3,519,311 + Echvi_2941 0.17 -0.7
3,519,311 + Echvi_2941 0.17 -1.3
3,519,311 + Echvi_2941 0.17 +0.3
3,519,312 - Echvi_2941 0.17 -0.4
3,519,316 - Echvi_2941 0.18 +0.3
3,519,316 - Echvi_2941 0.18 -1.1
3,519,316 - Echvi_2941 0.18 -0.1
3,519,382 + Echvi_2941 0.22 -0.4
3,519,511 + Echvi_2941 0.32 -0.3
3,519,512 - Echvi_2941 0.32 +1.3
3,519,512 - Echvi_2941 0.32 +1.0
3,519,530 + Echvi_2941 0.33 -0.5
3,519,531 - Echvi_2941 0.33 -2.2
3,519,538 + Echvi_2941 0.34 +0.6
3,519,630 - Echvi_2941 0.41 -0.1
3,519,663 + Echvi_2941 0.43 +1.1
3,519,663 + Echvi_2941 0.43 +0.2
3,519,664 - Echvi_2941 0.43 -0.3
3,519,746 - Echvi_2941 0.49 +1.6
3,519,854 + Echvi_2941 0.57 +0.2
3,519,939 + Echvi_2941 0.64 -0.4
3,519,939 + Echvi_2941 0.64 -1.0
3,519,939 + Echvi_2941 0.64 +0.0
3,519,940 - Echvi_2941 0.64 +0.6
3,519,940 - Echvi_2941 0.64 -1.5
3,519,940 - Echvi_2941 0.64 -0.4
3,519,962 + Echvi_2941 0.65 -1.0
3,519,963 - Echvi_2941 0.66 -1.2
3,520,023 + Echvi_2941 0.70 -0.2
3,520,024 - Echvi_2941 0.70 -1.0
3,520,024 - Echvi_2941 0.70 -0.4
3,520,024 - Echvi_2941 0.70 -0.9
3,520,044 - Echvi_2941 0.72 -2.2
3,520,067 + Echvi_2941 0.73 -1.2
3,520,067 + Echvi_2941 0.73 -0.3
3,520,097 + Echvi_2941 0.76 -1.4
3,520,098 - Echvi_2941 0.76 +0.4
3,520,165 + Echvi_2941 0.81 +0.7
3,520,169 + Echvi_2941 0.81 +0.1
3,520,169 + Echvi_2941 0.81 +0.4
3,520,169 + Echvi_2941 0.81 -0.4
3,520,170 - Echvi_2941 0.81 -1.0
3,520,170 - Echvi_2941 0.81 -1.0
3,520,226 + Echvi_2941 0.85 -1.1
3,520,231 + Echvi_2941 0.85 -0.8
3,520,232 - Echvi_2941 0.86 +0.2
3,520,284 + Echvi_2941 0.89 -0.2
3,520,284 + Echvi_2941 0.89 -0.0
3,520,285 - Echvi_2941 0.89 -1.1
3,520,395 + -0.2
3,520,398 - -0.3
3,520,638 + -0.2
3,520,639 - +0.7
3,520,749 + Echvi_2942 0.18 +0.2
3,520,750 - Echvi_2942 0.18 -2.2
3,520,752 - Echvi_2942 0.18 +1.3
3,520,781 + Echvi_2942 0.22 +0.4
3,520,782 - Echvi_2942 0.22 +1.3
3,520,878 + Echvi_2942 0.33 +0.5
3,521,034 + Echvi_2942 0.51 -0.5
3,521,034 + -0.5
3,521,094 - Echvi_2942 0.58 +0.7
3,521,112 + Echvi_2942 0.60 +1.4
3,521,112 + Echvi_2942 0.60 -0.2
3,521,113 - Echvi_2942 0.60 -0.4
3,521,159 - Echvi_2942 0.65 -0.7
3,521,167 - Echvi_2942 0.66 -0.9
3,521,173 - Echvi_2942 0.67 +0.1
3,521,176 - Echvi_2942 0.67 -0.0
3,521,176 - Echvi_2942 0.67 +0.3
3,521,207 + Echvi_2942 0.71 +0.0
3,521,208 - Echvi_2942 0.71 -0.4
3,521,265 + Echvi_2942 0.77 -0.0
3,521,275 + Echvi_2942 0.78 -0.2
3,521,276 - Echvi_2942 0.78 +0.0
3,521,309 - Echvi_2942 0.82 -0.1
3,521,309 - Echvi_2942 0.82 -1.0
3,521,317 - Echvi_2942 0.83 +2.8
3,521,377 - +0.2
3,521,377 - -0.5
3,521,377 - +0.2
3,521,391 + +0.1

Or see this region's nucleotide sequence