Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1434

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1432 and Echvi_1433 are separated by 195 nucleotidesEchvi_1433 and Echvi_1434 are separated by 39 nucleotidesEchvi_1434 and Echvi_1435 are separated by 155 nucleotidesEchvi_1435 and Echvi_1436 are separated by 56 nucleotides Echvi_1432: Echvi_1432 - hypothetical protein, at 1,645,666 to 1,646,439 _1432 Echvi_1433: Echvi_1433 - Phosphoribosyl-ATP pyrophosphohydrolase., at 1,646,635 to 1,647,102 _1433 Echvi_1434: Echvi_1434 - L-aminopeptidase/D-esterase, at 1,647,142 to 1,648,275 _1434 Echvi_1435: Echvi_1435 - hypothetical protein, at 1,648,431 to 1,649,039 _1435 Echvi_1436: Echvi_1436 - hypothetical protein, at 1,649,096 to 1,649,326 _1436 Position (kb) 1647 1648 1649Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1646.153 kb on + strand, within Echvi_1432at 1646.153 kb on + strand, within Echvi_1432at 1646.154 kb on - strand, within Echvi_1432at 1646.178 kb on + strand, within Echvi_1432at 1646.264 kb on + strand, within Echvi_1432at 1646.265 kb on - strand, within Echvi_1432at 1646.271 kb on - strand, within Echvi_1432at 1646.271 kb on - strand, within Echvi_1432at 1646.328 kb on + strand, within Echvi_1432at 1646.329 kb on - strand, within Echvi_1432at 1646.351 kb on + strand, within Echvi_1432at 1646.352 kb on - strand, within Echvi_1432at 1646.352 kb on - strand, within Echvi_1432at 1646.352 kb on - strand, within Echvi_1432at 1646.365 kb on - strandat 1646.447 kb on - strandat 1646.490 kb on - strandat 1646.490 kb on - strandat 1646.512 kb on + strandat 1646.512 kb on + strandat 1646.512 kb on + strandat 1646.513 kb on - strandat 1646.517 kb on - strandat 1646.541 kb on - strandat 1646.541 kb on - strandat 1646.541 kb on - strandat 1646.621 kb on + strandat 1646.629 kb on + strandat 1646.686 kb on - strand, within Echvi_1433at 1646.694 kb on + strand, within Echvi_1433at 1646.694 kb on + strand, within Echvi_1433at 1646.695 kb on - strand, within Echvi_1433at 1646.805 kb on - strand, within Echvi_1433at 1646.811 kb on - strand, within Echvi_1433at 1646.822 kb on + strand, within Echvi_1433at 1646.823 kb on - strand, within Echvi_1433at 1646.831 kb on + strand, within Echvi_1433at 1646.832 kb on - strand, within Echvi_1433at 1646.832 kb on - strand, within Echvi_1433at 1646.836 kb on + strand, within Echvi_1433at 1646.836 kb on + strand, within Echvi_1433at 1646.836 kb on + strand, within Echvi_1433at 1646.836 kb on + strand, within Echvi_1433at 1646.836 kb on + strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.837 kb on - strand, within Echvi_1433at 1646.840 kb on + strand, within Echvi_1433at 1646.840 kb on + strand, within Echvi_1433at 1646.841 kb on - strand, within Echvi_1433at 1646.841 kb on - strand, within Echvi_1433at 1646.903 kb on + strand, within Echvi_1433at 1646.904 kb on - strand, within Echvi_1433at 1646.913 kb on + strand, within Echvi_1433at 1646.913 kb on + strand, within Echvi_1433at 1646.913 kb on + strand, within Echvi_1433at 1646.913 kb on + strand, within Echvi_1433at 1646.913 kb on + strand, within Echvi_1433at 1646.914 kb on - strand, within Echvi_1433at 1646.914 kb on - strand, within Echvi_1433at 1646.916 kb on + strand, within Echvi_1433at 1647.016 kb on + strand, within Echvi_1433at 1647.042 kb on + strand, within Echvi_1433at 1647.064 kb on + strandat 1647.065 kb on - strandat 1647.065 kb on - strandat 1647.081 kb on - strandat 1647.081 kb on - strandat 1647.101 kb on - strandat 1647.109 kb on + strandat 1647.110 kb on - strandat 1647.113 kb on + strandat 1647.113 kb on + strandat 1647.113 kb on + strandat 1647.114 kb on - strandat 1647.114 kb on - strandat 1647.114 kb on - strandat 1647.114 kb on - strandat 1647.114 kb on - strandat 1647.116 kb on - strandat 1647.116 kb on - strandat 1647.116 kb on - strandat 1647.189 kb on + strandat 1647.190 kb on - strandat 1647.192 kb on + strandat 1647.192 kb on + strandat 1647.230 kb on - strandat 1647.404 kb on - strand, within Echvi_1434at 1647.495 kb on - strand, within Echvi_1434at 1647.495 kb on - strand, within Echvi_1434at 1647.495 kb on - strand, within Echvi_1434at 1647.532 kb on - strand, within Echvi_1434at 1647.539 kb on + strand, within Echvi_1434at 1647.645 kb on - strand, within Echvi_1434at 1647.645 kb on - strand, within Echvi_1434at 1647.681 kb on - strand, within Echvi_1434at 1647.781 kb on + strand, within Echvi_1434at 1647.782 kb on - strand, within Echvi_1434at 1647.782 kb on - strand, within Echvi_1434at 1647.865 kb on + strand, within Echvi_1434at 1647.865 kb on + strand, within Echvi_1434at 1648.008 kb on + strand, within Echvi_1434at 1648.024 kb on + strand, within Echvi_1434at 1648.066 kb on + strand, within Echvi_1434at 1648.067 kb on - strand, within Echvi_1434at 1648.072 kb on - strand, within Echvi_1434at 1648.118 kb on - strand, within Echvi_1434at 1648.120 kb on - strand, within Echvi_1434at 1648.120 kb on - strand, within Echvi_1434at 1648.145 kb on + strand, within Echvi_1434at 1648.145 kb on + strand, within Echvi_1434at 1648.146 kb on - strand, within Echvi_1434at 1648.146 kb on - strand, within Echvi_1434at 1648.146 kb on - strand, within Echvi_1434at 1648.247 kb on + strandat 1648.254 kb on - strandat 1648.273 kb on + strandat 1648.312 kb on + strandat 1648.317 kb on + strandat 1648.321 kb on + strandat 1648.321 kb on + strandat 1648.332 kb on + strandat 1648.333 kb on - strandat 1648.333 kb on - strandat 1648.401 kb on - strandat 1648.515 kb on - strand, within Echvi_1435at 1648.541 kb on - strand, within Echvi_1435at 1648.541 kb on - strand, within Echvi_1435at 1648.579 kb on - strand, within Echvi_1435at 1648.594 kb on - strand, within Echvi_1435at 1648.751 kb on - strand, within Echvi_1435at 1648.795 kb on + strand, within Echvi_1435at 1648.808 kb on + strand, within Echvi_1435at 1648.878 kb on - strand, within Echvi_1435at 1648.881 kb on + strand, within Echvi_1435at 1648.881 kb on + strand, within Echvi_1435at 1648.881 kb on + strand, within Echvi_1435at 1648.881 kb on + strand, within Echvi_1435at 1648.883 kb on + strand, within Echvi_1435at 1648.884 kb on - strand, within Echvi_1435at 1648.884 kb on - strand, within Echvi_1435at 1648.927 kb on + strand, within Echvi_1435at 1648.927 kb on + strand, within Echvi_1435at 1648.928 kb on - strand, within Echvi_1435at 1648.928 kb on - strand, within Echvi_1435at 1648.949 kb on + strand, within Echvi_1435at 1648.997 kb on + strandat 1648.997 kb on + strandat 1649.005 kb on - strandat 1649.030 kb on + strandat 1649.031 kb on - strandat 1649.050 kb on - strandat 1649.059 kb on + strandat 1649.060 kb on - strandat 1649.060 kb on - strandat 1649.060 kb on - strandat 1649.062 kb on + strandat 1649.094 kb on + strandat 1649.204 kb on - strand, within Echvi_1436at 1649.204 kb on - strand, within Echvi_1436at 1649.207 kb on + strand, within Echvi_1436at 1649.207 kb on + strand, within Echvi_1436at 1649.208 kb on - strand, within Echvi_1436at 1649.209 kb on + strand, within Echvi_1436at 1649.210 kb on - strand, within Echvi_1436at 1649.255 kb on + strand, within Echvi_1436at 1649.256 kb on - strand, within Echvi_1436at 1649.256 kb on - strand, within Echvi_1436

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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1,646,153 + Echvi_1432 0.63 -0.3
1,646,153 + Echvi_1432 0.63 -0.5
1,646,154 - Echvi_1432 0.63 +1.2
1,646,178 + Echvi_1432 0.66 -0.3
1,646,264 + Echvi_1432 0.77 -0.4
1,646,265 - Echvi_1432 0.77 +0.2
1,646,271 - Echvi_1432 0.78 +0.1
1,646,271 - Echvi_1432 0.78 -0.2
1,646,328 + Echvi_1432 0.86 -0.2
1,646,329 - Echvi_1432 0.86 -0.1
1,646,351 + Echvi_1432 0.89 -0.6
1,646,352 - Echvi_1432 0.89 -0.6
1,646,352 - Echvi_1432 0.89 -0.1
1,646,352 - Echvi_1432 0.89 -0.8
1,646,365 - +0.3
1,646,447 - -0.6
1,646,490 - +0.8
1,646,490 - -0.1
1,646,512 + +1.2
1,646,512 + +0.2
1,646,512 + -0.2
1,646,513 - +0.0
1,646,517 - -0.2
1,646,541 - -0.7
1,646,541 - +0.1
1,646,541 - +0.1
1,646,621 + -0.3
1,646,629 + -0.4
1,646,686 - Echvi_1433 0.11 +0.2
1,646,694 + Echvi_1433 0.13 -0.2
1,646,694 + Echvi_1433 0.13 -2.3
1,646,695 - Echvi_1433 0.13 +2.2
1,646,805 - Echvi_1433 0.36 +0.9
1,646,811 - Echvi_1433 0.38 -0.3
1,646,822 + Echvi_1433 0.40 -2.3
1,646,823 - Echvi_1433 0.40 -0.4
1,646,831 + Echvi_1433 0.42 -0.3
1,646,832 - Echvi_1433 0.42 +0.1
1,646,832 - Echvi_1433 0.42 -0.1
1,646,836 + Echvi_1433 0.43 -0.1
1,646,836 + Echvi_1433 0.43 +0.1
1,646,836 + Echvi_1433 0.43 +2.1
1,646,836 + Echvi_1433 0.43 -0.4
1,646,836 + Echvi_1433 0.43 -3.1
1,646,837 - Echvi_1433 0.43 +0.1
1,646,837 - Echvi_1433 0.43 -1.0
1,646,837 - Echvi_1433 0.43 -0.5
1,646,837 - Echvi_1433 0.43 -0.5
1,646,837 - Echvi_1433 0.43 -0.2
1,646,837 - Echvi_1433 0.43 -0.3
1,646,837 - Echvi_1433 0.43 -0.5
1,646,840 + Echvi_1433 0.44 -0.2
1,646,840 + Echvi_1433 0.44 -1.5
1,646,841 - Echvi_1433 0.44 -0.0
1,646,841 - Echvi_1433 0.44 -2.4
1,646,903 + Echvi_1433 0.57 +0.9
1,646,904 - Echvi_1433 0.57 +0.2
1,646,913 + Echvi_1433 0.59 +0.3
1,646,913 + Echvi_1433 0.59 +0.2
1,646,913 + Echvi_1433 0.59 +0.8
1,646,913 + Echvi_1433 0.59 +0.0
1,646,913 + Echvi_1433 0.59 -0.5
1,646,914 - Echvi_1433 0.60 -0.0
1,646,914 - Echvi_1433 0.60 -0.6
1,646,916 + Echvi_1433 0.60 -2.0
1,647,016 + Echvi_1433 0.81 +1.7
1,647,042 + Echvi_1433 0.87 +0.5
1,647,064 + +0.1
1,647,065 - -0.5
1,647,065 - +0.8
1,647,081 - -0.1
1,647,081 - +0.9
1,647,101 - +0.3
1,647,109 + +0.6
1,647,110 - +0.5
1,647,113 + -1.5
1,647,113 + +0.2
1,647,113 + -0.3
1,647,114 - +1.4
1,647,114 - +1.3
1,647,114 - +0.9
1,647,114 - -0.7
1,647,114 - -0.1
1,647,116 - +0.2
1,647,116 - -0.4
1,647,116 - +0.8
1,647,189 + -0.6
1,647,190 - +0.4
1,647,192 + -0.1
1,647,192 + +0.7
1,647,230 - -2.4
1,647,404 - Echvi_1434 0.23 +2.3
1,647,495 - Echvi_1434 0.31 +2.4
1,647,495 - Echvi_1434 0.31 +0.0
1,647,495 - Echvi_1434 0.31 +0.0
1,647,532 - Echvi_1434 0.34 +0.3
1,647,539 + Echvi_1434 0.35 -0.8
1,647,645 - Echvi_1434 0.44 -0.1
1,647,645 - Echvi_1434 0.44 +1.5
1,647,681 - Echvi_1434 0.48 +0.4
1,647,781 + Echvi_1434 0.56 +1.5
1,647,782 - Echvi_1434 0.56 +0.9
1,647,782 - Echvi_1434 0.56 -0.2
1,647,865 + Echvi_1434 0.64 +0.1
1,647,865 + Echvi_1434 0.64 +0.1
1,648,008 + Echvi_1434 0.76 +1.8
1,648,024 + Echvi_1434 0.78 +0.4
1,648,066 + Echvi_1434 0.81 +1.0
1,648,067 - Echvi_1434 0.82 +0.9
1,648,072 - Echvi_1434 0.82 -0.8
1,648,118 - Echvi_1434 0.86 +0.4
1,648,120 - Echvi_1434 0.86 +0.1
1,648,120 - Echvi_1434 0.86 -0.6
1,648,145 + Echvi_1434 0.88 -0.4
1,648,145 + Echvi_1434 0.88 +0.4
1,648,146 - Echvi_1434 0.89 +0.6
1,648,146 - Echvi_1434 0.89 +0.5
1,648,146 - Echvi_1434 0.89 +0.1
1,648,247 + +1.1
1,648,254 - +0.3
1,648,273 + +0.4
1,648,312 + +0.5
1,648,317 + -1.1
1,648,321 + -0.4
1,648,321 + -0.5
1,648,332 + +0.8
1,648,333 - +0.4
1,648,333 - -1.4
1,648,401 - -0.5
1,648,515 - Echvi_1435 0.14 -0.2
1,648,541 - Echvi_1435 0.18 +0.8
1,648,541 - Echvi_1435 0.18 -1.1
1,648,579 - Echvi_1435 0.24 -0.9
1,648,594 - Echvi_1435 0.27 +1.2
1,648,751 - Echvi_1435 0.53 +0.5
1,648,795 + Echvi_1435 0.60 -0.8
1,648,808 + Echvi_1435 0.62 +0.7
1,648,878 - Echvi_1435 0.73 +0.0
1,648,881 + Echvi_1435 0.74 +1.0
1,648,881 + Echvi_1435 0.74 -0.1
1,648,881 + Echvi_1435 0.74 +0.0
1,648,881 + Echvi_1435 0.74 +0.2
1,648,883 + Echvi_1435 0.74 +2.0
1,648,884 - Echvi_1435 0.74 -1.1
1,648,884 - Echvi_1435 0.74 -0.1
1,648,927 + Echvi_1435 0.81 +1.4
1,648,927 + Echvi_1435 0.81 +1.8
1,648,928 - Echvi_1435 0.82 +0.6
1,648,928 - Echvi_1435 0.82 -0.1
1,648,949 + Echvi_1435 0.85 -0.1
1,648,997 + -0.9
1,648,997 + -0.6
1,649,005 - +0.8
1,649,030 + +0.1
1,649,031 - +0.2
1,649,050 - -0.9
1,649,059 + -1.0
1,649,060 - -0.1
1,649,060 - +0.6
1,649,060 - -0.5
1,649,062 + -1.1
1,649,094 + +0.1
1,649,204 - Echvi_1436 0.47 -0.1
1,649,204 - Echvi_1436 0.47 +0.7
1,649,207 + Echvi_1436 0.48 +1.2
1,649,207 + Echvi_1436 0.48 +0.4
1,649,208 - Echvi_1436 0.48 -0.1
1,649,209 + Echvi_1436 0.49 -0.9
1,649,210 - Echvi_1436 0.49 -0.0
1,649,255 + Echvi_1436 0.69 -0.1
1,649,256 - Echvi_1436 0.69 +0.0
1,649,256 - Echvi_1436 0.69 -0.0

Or see this region's nucleotide sequence