Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0875

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0873 and Echvi_0874 are separated by 219 nucleotidesEchvi_0874 and Echvi_0875 are separated by 47 nucleotidesEchvi_0875 and Echvi_0876 are separated by 0 nucleotides Echvi_0873: Echvi_0873 - Predicted carboxypeptidase, at 996,455 to 997,948 _0873 Echvi_0874: Echvi_0874 - Uncharacterized protein conserved in bacteria, at 998,168 to 998,764 _0874 Echvi_0875: Echvi_0875 - hypothetical protein, at 998,812 to 999,375 _0875 Echvi_0876: Echvi_0876 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 999,376 to 1,002,489 _0876 Position (kb) 998 999 1000Strain fitness (log2 ratio) -2 -1 0 1 2at 997.984 kb on - strandat 997.984 kb on - strandat 998.074 kb on + strandat 998.112 kb on + strandat 998.160 kb on - strandat 998.222 kb on + strandat 998.223 kb on - strandat 998.297 kb on + strand, within Echvi_0874at 998.297 kb on + strand, within Echvi_0874at 998.298 kb on - strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.371 kb on - strand, within Echvi_0874at 998.504 kb on + strand, within Echvi_0874at 998.506 kb on + strand, within Echvi_0874at 998.507 kb on - strand, within Echvi_0874at 998.511 kb on - strand, within Echvi_0874at 998.663 kb on + strand, within Echvi_0874at 998.763 kb on - strandat 998.855 kb on + strandat 998.855 kb on + strandat 998.855 kb on + strandat 998.856 kb on - strandat 998.856 kb on - strandat 998.887 kb on + strand, within Echvi_0875at 998.931 kb on + strand, within Echvi_0875at 998.939 kb on + strand, within Echvi_0875at 999.032 kb on - strand, within Echvi_0875at 999.079 kb on - strand, within Echvi_0875at 999.104 kb on + strand, within Echvi_0875at 999.111 kb on + strand, within Echvi_0875at 999.222 kb on + strand, within Echvi_0875at 999.243 kb on + strand, within Echvi_0875at 999.244 kb on - strand, within Echvi_0875at 999.244 kb on - strand, within Echvi_0875at 999.319 kb on - strandat 999.334 kb on + strandat 999.338 kb on - strandat 999.365 kb on + strandat 999.374 kb on - strandat 999.377 kb on + strandat 999.390 kb on - strandat 999.425 kb on + strandat 999.425 kb on + strandat 999.426 kb on - strandat 999.428 kb on - strandat 999.470 kb on + strandat 999.509 kb on + strandat 999.510 kb on - strandat 999.533 kb on + strandat 999.533 kb on + strandat 999.534 kb on - strandat 999.534 kb on - strandat 999.593 kb on + strandat 999.647 kb on + strandat 999.647 kb on + strandat 999.647 kb on + strandat 999.648 kb on - strandat 999.649 kb on + strandat 999.649 kb on + strandat 999.650 kb on - strandat 999.725 kb on - strand, within Echvi_0876at 999.725 kb on - strand, within Echvi_0876at 999.767 kb on - strand, within Echvi_0876at 999.787 kb on + strand, within Echvi_0876at 999.903 kb on - strand, within Echvi_0876at 999.903 kb on - strand, within Echvi_0876at 999.903 kb on - strand, within Echvi_0876at 999.907 kb on - strand, within Echvi_0876at 999.915 kb on + strand, within Echvi_0876at 999.942 kb on - strand, within Echvi_0876at 1000.014 kb on + strand, within Echvi_0876at 1000.027 kb on + strand, within Echvi_0876at 1000.148 kb on + strand, within Echvi_0876at 1000.149 kb on - strand, within Echvi_0876at 1000.202 kb on - strand, within Echvi_0876at 1000.237 kb on - strand, within Echvi_0876at 1000.334 kb on + strand, within Echvi_0876at 1000.334 kb on + strand, within Echvi_0876at 1000.334 kb on + strand, within Echvi_0876at 1000.335 kb on - strand, within Echvi_0876at 1000.335 kb on - strand, within Echvi_0876at 1000.335 kb on - strand, within Echvi_0876at 1000.337 kb on - strand, within Echvi_0876at 1000.370 kb on + strand, within Echvi_0876

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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997,984 - -0.8
997,984 - +1.3
998,074 + +0.4
998,112 + -0.7
998,160 - -0.4
998,222 + -0.2
998,223 - -1.4
998,297 + Echvi_0874 0.22 +0.3
998,297 + Echvi_0874 0.22 +0.6
998,298 - Echvi_0874 0.22 -1.0
998,337 + Echvi_0874 0.28 +0.4
998,337 + Echvi_0874 0.28 +1.5
998,337 + Echvi_0874 0.28 +0.4
998,338 - Echvi_0874 0.28 +0.6
998,338 - Echvi_0874 0.28 -0.1
998,338 - Echvi_0874 0.28 -0.5
998,371 - Echvi_0874 0.34 +1.2
998,504 + Echvi_0874 0.56 +0.4
998,506 + Echvi_0874 0.57 -0.1
998,507 - Echvi_0874 0.57 -0.9
998,511 - Echvi_0874 0.57 -0.2
998,663 + Echvi_0874 0.83 +1.0
998,763 - -1.7
998,855 + +0.6
998,855 + +0.2
998,855 + +0.9
998,856 - -0.6
998,856 - +0.4
998,887 + Echvi_0875 0.13 +1.1
998,931 + Echvi_0875 0.21 +1.4
998,939 + Echvi_0875 0.23 +0.0
999,032 - Echvi_0875 0.39 +0.7
999,079 - Echvi_0875 0.47 -1.3
999,104 + Echvi_0875 0.52 +1.2
999,111 + Echvi_0875 0.53 -0.0
999,222 + Echvi_0875 0.73 +0.4
999,243 + Echvi_0875 0.76 -1.3
999,244 - Echvi_0875 0.77 +0.3
999,244 - Echvi_0875 0.77 +0.6
999,319 - -1.2
999,334 + -0.0
999,338 - -0.4
999,365 + +0.2
999,374 - +0.3
999,377 + -0.0
999,390 - +1.4
999,425 + -0.0
999,425 + +0.5
999,426 - -1.4
999,428 - +0.6
999,470 + +0.9
999,509 + -1.1
999,510 - +0.2
999,533 + -1.3
999,533 + +0.3
999,534 - -0.8
999,534 - +0.6
999,593 + -0.2
999,647 + +2.7
999,647 + -0.4
999,647 + -0.6
999,648 - -0.9
999,649 + -0.7
999,649 + -0.4
999,650 - +0.1
999,725 - Echvi_0876 0.11 -0.4
999,725 - Echvi_0876 0.11 +0.5
999,767 - Echvi_0876 0.13 -0.8
999,787 + Echvi_0876 0.13 +0.2
999,903 - Echvi_0876 0.17 -0.2
999,903 - Echvi_0876 0.17 +1.3
999,903 - Echvi_0876 0.17 +0.6
999,907 - Echvi_0876 0.17 +0.2
999,915 + Echvi_0876 0.17 -0.0
999,942 - Echvi_0876 0.18 -2.3
1,000,014 + Echvi_0876 0.20 +0.0
1,000,027 + Echvi_0876 0.21 -1.0
1,000,148 + Echvi_0876 0.25 +0.4
1,000,149 - Echvi_0876 0.25 -0.4
1,000,202 - Echvi_0876 0.27 -0.3
1,000,237 - Echvi_0876 0.28 -0.3
1,000,334 + Echvi_0876 0.31 -0.1
1,000,334 + Echvi_0876 0.31 -0.4
1,000,334 + Echvi_0876 0.31 -0.1
1,000,335 - Echvi_0876 0.31 +0.5
1,000,335 - Echvi_0876 0.31 -1.3
1,000,335 - Echvi_0876 0.31 -0.7
1,000,337 - Echvi_0876 0.31 -0.4
1,000,370 + Echvi_0876 0.32 +0.1

Or see this region's nucleotide sequence