Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0624

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0623 and Echvi_0624 are separated by 116 nucleotidesEchvi_0624 and Echvi_0625 are separated by 79 nucleotidesEchvi_0625 and Echvi_0626 are separated by 42 nucleotides Echvi_0623: Echvi_0623 - gliding motility-associated lipoprotein GldK, at 700,542 to 701,630 _0623 Echvi_0624: Echvi_0624 - Bacteroidetes-specific putative membrane protein, at 701,747 to 702,724 _0624 Echvi_0625: Echvi_0625 - Uroporphyrinogen-III synthase, at 702,804 to 703,577 _0625 Echvi_0626: Echvi_0626 - hypothetical protein, at 703,620 to 704,687 _0626 Position (kb) 701 702 703Strain fitness (log2 ratio) -1 0 1 2at 700.775 kb on + strand, within Echvi_0623at 700.776 kb on - strand, within Echvi_0623at 700.777 kb on + strand, within Echvi_0623at 700.777 kb on + strand, within Echvi_0623at 700.777 kb on + strand, within Echvi_0623at 700.777 kb on + strand, within Echvi_0623at 700.777 kb on + strand, within Echvi_0623at 700.778 kb on - strand, within Echvi_0623at 700.778 kb on - strand, within Echvi_0623at 700.818 kb on - strand, within Echvi_0623at 700.820 kb on - strand, within Echvi_0623at 700.820 kb on - strand, within Echvi_0623at 700.820 kb on - strand, within Echvi_0623at 700.832 kb on + strand, within Echvi_0623at 700.832 kb on + strand, within Echvi_0623at 700.833 kb on - strand, within Echvi_0623at 700.833 kb on - strand, within Echvi_0623at 700.843 kb on + strand, within Echvi_0623at 700.843 kb on + strand, within Echvi_0623at 700.844 kb on - strand, within Echvi_0623at 700.844 kb on - strand, within Echvi_0623at 700.864 kb on + strand, within Echvi_0623at 700.865 kb on - strand, within Echvi_0623at 700.886 kb on - strand, within Echvi_0623at 700.918 kb on - strand, within Echvi_0623at 700.918 kb on - strand, within Echvi_0623at 700.938 kb on + strand, within Echvi_0623at 700.938 kb on + strand, within Echvi_0623at 700.942 kb on + strand, within Echvi_0623at 700.942 kb on + strand, within Echvi_0623at 700.960 kb on + strand, within Echvi_0623at 700.960 kb on + strand, within Echvi_0623at 700.986 kb on - strand, within Echvi_0623at 700.993 kb on + strand, within Echvi_0623at 700.993 kb on + strand, within Echvi_0623at 700.994 kb on - strand, within Echvi_0623at 700.994 kb on - strand, within Echvi_0623at 701.038 kb on + strand, within Echvi_0623at 701.048 kb on + strand, within Echvi_0623at 701.048 kb on + strand, within Echvi_0623at 701.049 kb on - strand, within Echvi_0623at 701.049 kb on - strand, within Echvi_0623at 701.063 kb on + strand, within Echvi_0623at 701.064 kb on - strand, within Echvi_0623at 701.068 kb on + strand, within Echvi_0623at 701.068 kb on + strand, within Echvi_0623at 701.068 kb on + strand, within Echvi_0623at 701.068 kb on + strand, within Echvi_0623at 701.068 kb on + strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.069 kb on - strand, within Echvi_0623at 701.119 kb on - strand, within Echvi_0623at 701.152 kb on + strand, within Echvi_0623at 701.152 kb on + strand, within Echvi_0623at 701.152 kb on + strand, within Echvi_0623at 701.155 kb on + strand, within Echvi_0623at 701.155 kb on + strand, within Echvi_0623at 701.156 kb on - strand, within Echvi_0623at 701.177 kb on - strand, within Echvi_0623at 701.177 kb on - strand, within Echvi_0623at 701.177 kb on - strand, within Echvi_0623at 701.177 kb on - strand, within Echvi_0623at 701.187 kb on - strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.202 kb on + strand, within Echvi_0623at 701.203 kb on - strand, within Echvi_0623at 701.203 kb on - strand, within Echvi_0623at 701.207 kb on + strand, within Echvi_0623at 701.207 kb on + strand, within Echvi_0623at 701.207 kb on + strand, within Echvi_0623at 701.207 kb on + strand, within Echvi_0623at 701.207 kb on + strand, within Echvi_0623at 701.207 kb on + strand, within Echvi_0623at 701.208 kb on - strand, within Echvi_0623at 701.208 kb on - strand, within Echvi_0623at 701.208 kb on - strand, within Echvi_0623at 701.208 kb on - strand, within Echvi_0623at 701.210 kb on + strand, within Echvi_0623at 701.232 kb on - strand, within Echvi_0623at 701.234 kb on + strand, within Echvi_0623at 701.235 kb on - strand, within Echvi_0623at 701.262 kb on - strand, within Echvi_0623at 701.267 kb on + strand, within Echvi_0623at 701.268 kb on - strand, within Echvi_0623at 701.315 kb on - strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.335 kb on + strand, within Echvi_0623at 701.336 kb on - strand, within Echvi_0623at 701.336 kb on - strand, within Echvi_0623at 701.346 kb on - strand, within Echvi_0623at 701.348 kb on - strand, within Echvi_0623at 701.387 kb on + strand, within Echvi_0623at 701.400 kb on - strand, within Echvi_0623at 701.544 kb on - strandat 701.627 kb on - strandat 701.630 kb on + strandat 701.630 kb on + strandat 701.630 kb on + strandat 701.630 kb on + strandat 701.631 kb on - strandat 701.631 kb on - strandat 701.632 kb on + strandat 701.633 kb on - strandat 701.774 kb on + strandat 701.779 kb on + strandat 701.779 kb on + strandat 701.779 kb on + strandat 701.779 kb on + strandat 701.779 kb on + strandat 701.779 kb on + strandat 701.779 kb on + strandat 701.780 kb on - strandat 701.780 kb on - strandat 701.780 kb on - strandat 701.780 kb on - strandat 701.780 kb on - strandat 701.780 kb on - strandat 701.812 kb on + strandat 701.824 kb on + strandat 701.824 kb on + strandat 701.825 kb on - strandat 701.825 kb on - strandat 701.867 kb on + strand, within Echvi_0624at 701.883 kb on + strand, within Echvi_0624at 701.894 kb on + strand, within Echvi_0624at 701.903 kb on - strand, within Echvi_0624at 701.918 kb on - strand, within Echvi_0624at 701.985 kb on + strand, within Echvi_0624at 701.985 kb on + strand, within Echvi_0624at 701.986 kb on - strand, within Echvi_0624at 701.986 kb on - strand, within Echvi_0624at 701.986 kb on - strand, within Echvi_0624at 701.986 kb on - strand, within Echvi_0624at 701.993 kb on + strand, within Echvi_0624at 701.993 kb on + strand, within Echvi_0624at 702.038 kb on + strand, within Echvi_0624at 702.046 kb on + strand, within Echvi_0624at 702.046 kb on + strand, within Echvi_0624at 702.047 kb on - strand, within Echvi_0624at 702.047 kb on - strand, within Echvi_0624at 702.086 kb on - strand, within Echvi_0624at 702.086 kb on - strand, within Echvi_0624at 702.102 kb on + strand, within Echvi_0624at 702.102 kb on + strand, within Echvi_0624at 702.102 kb on + strand, within Echvi_0624at 702.189 kb on + strand, within Echvi_0624at 702.189 kb on + strand, within Echvi_0624at 702.190 kb on - strand, within Echvi_0624at 702.190 kb on - strand, within Echvi_0624at 702.190 kb on - strand, within Echvi_0624at 702.192 kb on + strand, within Echvi_0624at 702.193 kb on - strand, within Echvi_0624at 702.193 kb on - strand, within Echvi_0624at 702.256 kb on + strand, within Echvi_0624at 702.257 kb on - strand, within Echvi_0624at 702.266 kb on - strand, within Echvi_0624at 702.301 kb on - strand, within Echvi_0624at 702.304 kb on + strand, within Echvi_0624at 702.305 kb on - strand, within Echvi_0624at 702.305 kb on - strand, within Echvi_0624at 702.305 kb on - strand, within Echvi_0624at 702.310 kb on + strand, within Echvi_0624at 702.311 kb on - strand, within Echvi_0624at 702.372 kb on + strand, within Echvi_0624at 702.372 kb on + strand, within Echvi_0624at 702.383 kb on + strand, within Echvi_0624at 702.383 kb on + strand, within Echvi_0624at 702.383 kb on + strand, within Echvi_0624at 702.383 kb on + strand, within Echvi_0624at 702.383 kb on + strand, within Echvi_0624at 702.385 kb on + strand, within Echvi_0624at 702.385 kb on + strand, within Echvi_0624at 702.385 kb on + strand, within Echvi_0624at 702.385 kb on + strand, within Echvi_0624at 702.386 kb on - strand, within Echvi_0624at 702.435 kb on - strand, within Echvi_0624at 702.526 kb on - strand, within Echvi_0624at 702.526 kb on - strand, within Echvi_0624at 702.526 kb on - strand, within Echvi_0624at 702.531 kb on - strand, within Echvi_0624at 702.572 kb on - strand, within Echvi_0624at 702.572 kb on - strand, within Echvi_0624at 702.595 kb on + strand, within Echvi_0624at 702.596 kb on - strand, within Echvi_0624at 702.598 kb on - strand, within Echvi_0624at 702.612 kb on + strand, within Echvi_0624at 702.612 kb on + strand, within Echvi_0624at 702.612 kb on + strand, within Echvi_0624at 702.612 kb on + strand, within Echvi_0624at 702.613 kb on - strand, within Echvi_0624at 702.618 kb on + strand, within Echvi_0624at 702.618 kb on + strand, within Echvi_0624at 702.618 kb on + strand, within Echvi_0624at 702.619 kb on - strand, within Echvi_0624at 702.619 kb on - strand, within Echvi_0624at 702.619 kb on - strand, within Echvi_0624at 702.681 kb on - strandat 702.697 kb on + strandat 702.737 kb on + strandat 702.737 kb on + strandat 702.750 kb on + strandat 702.751 kb on - strandat 702.756 kb on + strandat 702.761 kb on + strandat 702.769 kb on + strandat 702.770 kb on - strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.789 kb on - strandat 702.812 kb on + strandat 703.577 kb on + strandat 703.577 kb on + strandat 703.578 kb on - strandat 703.578 kb on - strandat 703.578 kb on - strandat 703.578 kb on - strandat 703.701 kb on - strandat 703.722 kb on + strandat 703.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
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700,775 + Echvi_0623 0.21 +0.8
700,776 - Echvi_0623 0.21 +0.9
700,777 + Echvi_0623 0.22 +0.9
700,777 + Echvi_0623 0.22 +0.9
700,777 + Echvi_0623 0.22 +0.5
700,777 + Echvi_0623 0.22 +1.0
700,777 + Echvi_0623 0.22 +1.0
700,778 - Echvi_0623 0.22 +0.6
700,778 - Echvi_0623 0.22 +0.6
700,818 - Echvi_0623 0.25 +0.4
700,820 - Echvi_0623 0.26 +1.2
700,820 - Echvi_0623 0.26 +0.4
700,820 - Echvi_0623 0.26 +0.6
700,832 + Echvi_0623 0.27 +0.8
700,832 + Echvi_0623 0.27 +0.6
700,833 - Echvi_0623 0.27 +0.5
700,833 - Echvi_0623 0.27 +1.5
700,843 + Echvi_0623 0.28 +0.8
700,843 + Echvi_0623 0.28 +1.6
700,844 - Echvi_0623 0.28 +0.6
700,844 - Echvi_0623 0.28 +0.8
700,864 + Echvi_0623 0.30 +0.7
700,865 - Echvi_0623 0.30 +0.7
700,886 - Echvi_0623 0.32 +0.9
700,918 - Echvi_0623 0.35 +1.0
700,918 - Echvi_0623 0.35 +0.4
700,938 + Echvi_0623 0.36 +1.9
700,938 + Echvi_0623 0.36 +1.2
700,942 + Echvi_0623 0.37 +1.3
700,942 + Echvi_0623 0.37 +0.7
700,960 + Echvi_0623 0.38 +1.3
700,960 + Echvi_0623 0.38 +0.2
700,986 - Echvi_0623 0.41 -0.2
700,993 + Echvi_0623 0.41 +0.9
700,993 + Echvi_0623 0.41 +0.9
700,994 - Echvi_0623 0.42 +0.8
700,994 - Echvi_0623 0.42 +0.8
701,038 + Echvi_0623 0.46 -0.5
701,048 + Echvi_0623 0.46 +1.5
701,048 + Echvi_0623 0.46 +0.7
701,049 - Echvi_0623 0.47 +1.2
701,049 - Echvi_0623 0.47 +0.4
701,063 + Echvi_0623 0.48 -0.7
701,064 - Echvi_0623 0.48 +0.9
701,068 + Echvi_0623 0.48 +0.8
701,068 + Echvi_0623 0.48 +0.7
701,068 + Echvi_0623 0.48 +0.2
701,068 + Echvi_0623 0.48 +1.0
701,068 + Echvi_0623 0.48 +1.1
701,069 - Echvi_0623 0.48 -0.2
701,069 - Echvi_0623 0.48 +1.2
701,069 - Echvi_0623 0.48 +0.5
701,069 - Echvi_0623 0.48 -0.9
701,069 - Echvi_0623 0.48 +0.5
701,069 - Echvi_0623 0.48 +0.5
701,069 - Echvi_0623 0.48 +1.4
701,069 - Echvi_0623 0.48 +0.9
701,119 - Echvi_0623 0.53 +0.5
701,152 + Echvi_0623 0.56 +1.4
701,152 + Echvi_0623 0.56 +0.9
701,152 + Echvi_0623 0.56 +0.8
701,155 + Echvi_0623 0.56 +0.5
701,155 + Echvi_0623 0.56 +0.8
701,156 - Echvi_0623 0.56 +1.7
701,177 - Echvi_0623 0.58 +0.4
701,177 - Echvi_0623 0.58 +1.2
701,177 - Echvi_0623 0.58 +1.3
701,177 - Echvi_0623 0.58 +0.4
701,187 - Echvi_0623 0.59 +1.1
701,202 + Echvi_0623 0.61 +0.9
701,202 + Echvi_0623 0.61 +0.7
701,202 + Echvi_0623 0.61 +1.4
701,202 + Echvi_0623 0.61 +0.6
701,202 + Echvi_0623 0.61 +0.3
701,202 + Echvi_0623 0.61 +0.9
701,202 + Echvi_0623 0.61 +0.8
701,203 - Echvi_0623 0.61 +1.9
701,203 - Echvi_0623 0.61 +1.1
701,207 + Echvi_0623 0.61 +0.7
701,207 + Echvi_0623 0.61 +0.4
701,207 + Echvi_0623 0.61 +1.0
701,207 + Echvi_0623 0.61 +1.0
701,207 + Echvi_0623 0.61 +0.2
701,207 + Echvi_0623 0.61 +1.2
701,208 - Echvi_0623 0.61 +0.4
701,208 - Echvi_0623 0.61 +0.4
701,208 - Echvi_0623 0.61 +0.4
701,208 - Echvi_0623 0.61 -0.0
701,210 + Echvi_0623 0.61 +1.6
701,232 - Echvi_0623 0.63 -0.0
701,234 + Echvi_0623 0.64 +0.0
701,235 - Echvi_0623 0.64 +0.7
701,262 - Echvi_0623 0.66 +1.3
701,267 + Echvi_0623 0.67 +0.6
701,268 - Echvi_0623 0.67 +0.8
701,315 - Echvi_0623 0.71 +0.5
701,335 + Echvi_0623 0.73 -1.1
701,335 + Echvi_0623 0.73 +0.6
701,335 + Echvi_0623 0.73 +1.0
701,335 + Echvi_0623 0.73 +0.7
701,335 + Echvi_0623 0.73 +0.6
701,335 + Echvi_0623 0.73 +1.7
701,335 + Echvi_0623 0.73 +0.9
701,336 - Echvi_0623 0.73 +0.9
701,336 - Echvi_0623 0.73 +0.5
701,346 - Echvi_0623 0.74 +0.2
701,348 - Echvi_0623 0.74 +0.4
701,387 + Echvi_0623 0.78 +1.3
701,400 - Echvi_0623 0.79 +0.5
701,544 - +0.6
701,627 - -0.3
701,630 + +0.7
701,630 + +1.5
701,630 + +0.9
701,630 + +0.1
701,631 - +1.1
701,631 - +0.7
701,632 + +0.7
701,633 - -1.1
701,774 + +1.3
701,779 + +0.9
701,779 + +0.6
701,779 + -0.3
701,779 + +0.5
701,779 + +0.5
701,779 + +1.0
701,779 + +0.6
701,780 - +1.0
701,780 - +0.5
701,780 - -0.2
701,780 - +0.7
701,780 - -0.6
701,780 - +2.5
701,812 + +0.7
701,824 + +0.5
701,824 + +0.7
701,825 - -0.6
701,825 - -0.6
701,867 + Echvi_0624 0.12 +1.0
701,883 + Echvi_0624 0.14 +0.7
701,894 + Echvi_0624 0.15 +1.0
701,903 - Echvi_0624 0.16 +0.1
701,918 - Echvi_0624 0.17 +0.3
701,985 + Echvi_0624 0.24 +2.1
701,985 + Echvi_0624 0.24 -0.1
701,986 - Echvi_0624 0.24 +0.7
701,986 - Echvi_0624 0.24 +1.3
701,986 - Echvi_0624 0.24 +0.5
701,986 - Echvi_0624 0.24 -0.7
701,993 + Echvi_0624 0.25 -0.6
701,993 + Echvi_0624 0.25 +0.8
702,038 + Echvi_0624 0.30 +0.7
702,046 + Echvi_0624 0.31 +0.1
702,046 + Echvi_0624 0.31 +0.0
702,047 - Echvi_0624 0.31 -0.3
702,047 - Echvi_0624 0.31 +0.5
702,086 - Echvi_0624 0.35 +0.3
702,086 - Echvi_0624 0.35 -0.9
702,102 + Echvi_0624 0.36 +1.1
702,102 + Echvi_0624 0.36 +0.3
702,102 + Echvi_0624 0.36 +0.7
702,189 + Echvi_0624 0.45 +0.9
702,189 + Echvi_0624 0.45 +0.5
702,190 - Echvi_0624 0.45 +0.7
702,190 - Echvi_0624 0.45 -0.9
702,190 - Echvi_0624 0.45 +0.6
702,192 + Echvi_0624 0.46 +0.7
702,193 - Echvi_0624 0.46 +1.4
702,193 - Echvi_0624 0.46 +0.2
702,256 + Echvi_0624 0.52 +1.0
702,257 - Echvi_0624 0.52 +0.3
702,266 - Echvi_0624 0.53 +0.5
702,301 - Echvi_0624 0.57 -0.9
702,304 + Echvi_0624 0.57 -1.2
702,305 - Echvi_0624 0.57 +1.5
702,305 - Echvi_0624 0.57 -0.1
702,305 - Echvi_0624 0.57 -1.1
702,310 + Echvi_0624 0.58 +0.1
702,311 - Echvi_0624 0.58 -1.5
702,372 + Echvi_0624 0.64 +0.5
702,372 + Echvi_0624 0.64 +1.3
702,383 + Echvi_0624 0.65 +1.3
702,383 + Echvi_0624 0.65 +1.6
702,383 + Echvi_0624 0.65 +0.9
702,383 + Echvi_0624 0.65 +1.1
702,383 + Echvi_0624 0.65 -0.5
702,385 + Echvi_0624 0.65 +0.4
702,385 + Echvi_0624 0.65 +1.4
702,385 + Echvi_0624 0.65 +1.9
702,385 + Echvi_0624 0.65 +1.7
702,386 - Echvi_0624 0.65 +0.7
702,435 - Echvi_0624 0.70 +0.4
702,526 - Echvi_0624 0.80 +0.6
702,526 - Echvi_0624 0.80 +0.5
702,526 - Echvi_0624 0.80 -0.7
702,531 - Echvi_0624 0.80 -0.7
702,572 - Echvi_0624 0.84 +0.3
702,572 - Echvi_0624 0.84 +0.6
702,595 + Echvi_0624 0.87 +0.5
702,596 - Echvi_0624 0.87 -0.0
702,598 - Echvi_0624 0.87 -0.5
702,612 + Echvi_0624 0.88 +0.2
702,612 + Echvi_0624 0.88 +0.8
702,612 + Echvi_0624 0.88 +1.1
702,612 + Echvi_0624 0.88 +0.8
702,613 - Echvi_0624 0.89 -0.2
702,618 + Echvi_0624 0.89 +1.3
702,618 + Echvi_0624 0.89 +0.8
702,618 + Echvi_0624 0.89 +0.6
702,619 - Echvi_0624 0.89 -0.1
702,619 - Echvi_0624 0.89 +0.7
702,619 - Echvi_0624 0.89 +0.7
702,681 - -0.3
702,697 + +1.0
702,737 + +0.7
702,737 + +0.7
702,750 + +0.5
702,751 - -0.3
702,756 + +0.7
702,761 + +1.6
702,769 + +1.3
702,770 - -0.4
702,788 + +0.1
702,788 + +0.9
702,788 + -0.6
702,788 + +2.4
702,788 + +1.2
702,788 + +1.9
702,788 + +0.3
702,789 - +0.3
702,812 + +2.1
703,577 + +2.3
703,577 + +1.8
703,578 - +0.8
703,578 - +1.0
703,578 - +1.9
703,578 - +0.4
703,701 - -0.8
703,722 + -0.5
703,722 + +0.6

Or see this region's nucleotide sequence