Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0134

Experiment: m.b. Thallium(I) acetate 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0133 and Echvi_0134 overlap by 106 nucleotidesEchvi_0134 and Echvi_0135 overlap by 29 nucleotidesEchvi_0135 and Echvi_0136 are separated by 6 nucleotides Echvi_0133: Echvi_0133 - KWG Leptospira., at 132,312 to 133,874 _0133 Echvi_0134: Echvi_0134 - hypothetical protein, at 133,769 to 134,284 _0134 Echvi_0135: Echvi_0135 - Uncharacterized protein conserved in bacteria, at 134,256 to 135,263 _0135 Echvi_0136: Echvi_0136 - Membrane-bound serine protease (ClpP class), at 135,270 to 135,728 _0136 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.830 kb on + strand, within Echvi_0133at 132.830 kb on + strand, within Echvi_0133at 132.830 kb on + strand, within Echvi_0133at 132.830 kb on + strand, within Echvi_0133at 132.830 kb on + strand, within Echvi_0133at 132.831 kb on - strand, within Echvi_0133at 132.831 kb on - strand, within Echvi_0133at 132.834 kb on + strand, within Echvi_0133at 132.834 kb on + strand, within Echvi_0133at 132.834 kb on + strand, within Echvi_0133at 132.835 kb on - strand, within Echvi_0133at 132.835 kb on - strand, within Echvi_0133at 132.835 kb on - strand, within Echvi_0133at 132.835 kb on - strand, within Echvi_0133at 132.891 kb on + strand, within Echvi_0133at 132.899 kb on + strand, within Echvi_0133at 132.918 kb on + strand, within Echvi_0133at 132.918 kb on + strand, within Echvi_0133at 132.918 kb on + strand, within Echvi_0133at 132.919 kb on - strand, within Echvi_0133at 132.993 kb on + strand, within Echvi_0133at 132.994 kb on - strand, within Echvi_0133at 132.994 kb on - strand, within Echvi_0133at 133.036 kb on - strand, within Echvi_0133at 133.036 kb on - strand, within Echvi_0133at 133.036 kb on - strand, within Echvi_0133at 133.040 kb on + strand, within Echvi_0133at 133.040 kb on + strand, within Echvi_0133at 133.040 kb on + strand, within Echvi_0133at 133.040 kb on + strand, within Echvi_0133at 133.041 kb on - strand, within Echvi_0133at 133.041 kb on - strand, within Echvi_0133at 133.044 kb on + strand, within Echvi_0133at 133.083 kb on + strand, within Echvi_0133at 133.083 kb on + strand, within Echvi_0133at 133.083 kb on + strand, within Echvi_0133at 133.129 kb on + strand, within Echvi_0133at 133.179 kb on + strand, within Echvi_0133at 133.560 kb on + strand, within Echvi_0133at 133.564 kb on - strand, within Echvi_0133at 133.571 kb on + strand, within Echvi_0133at 133.571 kb on + strand, within Echvi_0133at 133.571 kb on + strand, within Echvi_0133at 133.572 kb on - strand, within Echvi_0133at 133.572 kb on - strand, within Echvi_0133at 133.596 kb on + strand, within Echvi_0133at 133.596 kb on + strand, within Echvi_0133at 133.596 kb on + strand, within Echvi_0133at 133.597 kb on - strand, within Echvi_0133at 133.597 kb on - strand, within Echvi_0133at 133.638 kb on - strand, within Echvi_0133at 133.690 kb on - strand, within Echvi_0133at 133.690 kb on - strandat 133.765 kb on - strandat 133.765 kb on - strandat 133.765 kb on - strandat 133.768 kb on - strandat 133.873 kb on - strandat 133.912 kb on + strand, within Echvi_0134at 133.933 kb on + strand, within Echvi_0134at 133.933 kb on + strand, within Echvi_0134at 133.934 kb on - strand, within Echvi_0134at 133.963 kb on + strand, within Echvi_0134at 134.003 kb on - strand, within Echvi_0134at 134.003 kb on - strand, within Echvi_0134at 134.013 kb on + strand, within Echvi_0134at 134.034 kb on - strand, within Echvi_0134at 134.034 kb on - strand, within Echvi_0134at 134.034 kb on - strand, within Echvi_0134at 134.220 kb on - strand, within Echvi_0134at 134.237 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.280 kb on - strandat 134.280 kb on - strandat 134.356 kb on + strandat 134.359 kb on + strand, within Echvi_0135at 134.434 kb on - strand, within Echvi_0135at 134.514 kb on - strand, within Echvi_0135at 134.528 kb on + strand, within Echvi_0135at 134.556 kb on + strand, within Echvi_0135at 134.635 kb on - strand, within Echvi_0135at 134.635 kb on - strand, within Echvi_0135at 134.690 kb on + strand, within Echvi_0135at 134.859 kb on - strand, within Echvi_0135at 134.883 kb on + strand, within Echvi_0135at 134.883 kb on + strand, within Echvi_0135at 134.884 kb on - strand, within Echvi_0135at 134.951 kb on + strand, within Echvi_0135at 134.997 kb on + strand, within Echvi_0135at 135.087 kb on - strand, within Echvi_0135at 135.239 kb on + strandat 135.255 kb on + strandat 135.256 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.269 kb on - strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.272 kb on - strandat 135.276 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.025 mg/ml
remove
132,830 + Echvi_0133 0.33 -0.6
132,830 + Echvi_0133 0.33 +0.2
132,830 + Echvi_0133 0.33 -0.4
132,830 + Echvi_0133 0.33 -0.3
132,830 + Echvi_0133 0.33 +1.3
132,831 - Echvi_0133 0.33 -0.4
132,831 - Echvi_0133 0.33 +0.0
132,834 + Echvi_0133 0.33 +0.3
132,834 + Echvi_0133 0.33 -2.1
132,834 + Echvi_0133 0.33 +0.7
132,835 - Echvi_0133 0.33 +0.7
132,835 - Echvi_0133 0.33 +1.1
132,835 - Echvi_0133 0.33 +0.8
132,835 - Echvi_0133 0.33 +1.0
132,891 + Echvi_0133 0.37 +0.6
132,899 + Echvi_0133 0.38 +0.4
132,918 + Echvi_0133 0.39 +0.7
132,918 + Echvi_0133 0.39 +0.2
132,918 + Echvi_0133 0.39 +0.5
132,919 - Echvi_0133 0.39 +1.3
132,993 + Echvi_0133 0.44 +0.3
132,994 - Echvi_0133 0.44 -0.9
132,994 - Echvi_0133 0.44 +0.2
133,036 - Echvi_0133 0.46 +0.0
133,036 - Echvi_0133 0.46 +0.7
133,036 - Echvi_0133 0.46 -1.5
133,040 + Echvi_0133 0.47 +0.5
133,040 + Echvi_0133 0.47 -0.2
133,040 + Echvi_0133 0.47 -0.4
133,040 + Echvi_0133 0.47 +0.9
133,041 - Echvi_0133 0.47 +0.6
133,041 - Echvi_0133 0.47 -0.4
133,044 + Echvi_0133 0.47 +0.1
133,083 + Echvi_0133 0.49 -0.3
133,083 + Echvi_0133 0.49 -0.3
133,083 + Echvi_0133 0.49 +0.4
133,129 + Echvi_0133 0.52 -1.6
133,179 + Echvi_0133 0.55 +0.4
133,560 + Echvi_0133 0.80 -0.6
133,564 - Echvi_0133 0.80 -0.1
133,571 + Echvi_0133 0.81 +0.3
133,571 + Echvi_0133 0.81 -0.2
133,571 + Echvi_0133 0.81 -0.9
133,572 - Echvi_0133 0.81 +1.1
133,572 - Echvi_0133 0.81 -0.1
133,596 + Echvi_0133 0.82 +0.6
133,596 + Echvi_0133 0.82 -0.2
133,596 + Echvi_0133 0.82 +1.3
133,597 - Echvi_0133 0.82 +1.7
133,597 - Echvi_0133 0.82 -1.4
133,638 - Echvi_0133 0.85 +0.2
133,690 - Echvi_0133 0.88 -0.2
133,690 - +0.2
133,765 - +0.2
133,765 - +0.2
133,765 - +0.2
133,768 - +1.3
133,873 - +0.1
133,912 + Echvi_0134 0.28 +0.4
133,933 + Echvi_0134 0.32 +0.9
133,933 + Echvi_0134 0.32 +0.7
133,934 - Echvi_0134 0.32 +0.3
133,963 + Echvi_0134 0.38 -0.7
134,003 - Echvi_0134 0.45 +0.9
134,003 - Echvi_0134 0.45 +1.2
134,013 + Echvi_0134 0.47 +0.0
134,034 - Echvi_0134 0.51 +0.4
134,034 - Echvi_0134 0.51 +0.4
134,034 - Echvi_0134 0.51 -1.4
134,220 - Echvi_0134 0.87 +0.3
134,237 + +0.1
134,279 + -0.7
134,279 + -0.7
134,279 + -0.3
134,279 + +0.6
134,279 + -0.1
134,280 - +0.9
134,280 - -0.8
134,356 + +0.2
134,359 + Echvi_0135 0.10 +0.9
134,434 - Echvi_0135 0.18 +0.1
134,514 - Echvi_0135 0.26 +0.8
134,528 + Echvi_0135 0.27 -0.0
134,556 + Echvi_0135 0.30 +1.1
134,635 - Echvi_0135 0.38 -1.0
134,635 - Echvi_0135 0.38 +0.6
134,690 + Echvi_0135 0.43 +0.1
134,859 - Echvi_0135 0.60 -0.6
134,883 + Echvi_0135 0.62 +0.7
134,883 + Echvi_0135 0.62 +0.6
134,884 - Echvi_0135 0.62 +0.6
134,951 + Echvi_0135 0.69 +0.3
134,997 + Echvi_0135 0.74 +0.3
135,087 - Echvi_0135 0.82 -0.1
135,239 + +0.4
135,255 + +0.2
135,256 - -0.7
135,264 - -1.6
135,264 - +0.5
135,264 - -1.1
135,267 - +0.1
135,267 - +1.5
135,267 - +1.5
135,269 - +1.0
135,271 + +0.0
135,271 + -0.8
135,271 + -0.7
135,272 - -1.4
135,276 - -0.3

Or see this region's nucleotide sequence