Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4219 and EX28DRAFT_4220 are separated by 10 nucleotides EX28DRAFT_4220 and EX28DRAFT_4221 overlap by 1 nucleotides EX28DRAFT_4221 and EX28DRAFT_4222 are separated by 240 nucleotides EX28DRAFT_4222 and EX28DRAFT_4223 are separated by 5 nucleotides
EX28DRAFT_4219: EX28DRAFT_4219 - ABC-type sugar transport system, auxiliary component, at 26,340 to 27,026
_4219
EX28DRAFT_4220: EX28DRAFT_4220 - ketose-bisphosphate aldolase, at 27,037 to 27,897
_4220
EX28DRAFT_4221: EX28DRAFT_4221 - Sugar kinases, ribokinase family, at 27,897 to 28,910
_4221
EX28DRAFT_4222: EX28DRAFT_4222 - hypothetical protein, at 29,151 to 29,729
_4222
EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949
_4223
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1
2 at 26.956 kb on - strand, within EX28DRAFT_4219 at 26.957 kb on + strand, within EX28DRAFT_4219 at 26.957 kb on + strand, within EX28DRAFT_4219 at 26.957 kb on + strand, within EX28DRAFT_4219 at 27.007 kb on - strand at 27.007 kb on - strand at 27.024 kb on + strand at 27.025 kb on - strand at 27.025 kb on - strand at 27.025 kb on - strand at 27.032 kb on - strand at 27.032 kb on - strand at 27.198 kb on + strand, within EX28DRAFT_4220 at 27.199 kb on - strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.202 kb on + strand, within EX28DRAFT_4220 at 27.203 kb on - strand, within EX28DRAFT_4220 at 27.355 kb on - strand, within EX28DRAFT_4220 at 27.364 kb on + strand, within EX28DRAFT_4220 at 27.365 kb on - strand, within EX28DRAFT_4220 at 27.586 kb on + strand, within EX28DRAFT_4220 at 27.586 kb on + strand, within EX28DRAFT_4220 at 27.799 kb on + strand, within EX28DRAFT_4220 at 27.800 kb on - strand, within EX28DRAFT_4220 at 27.992 kb on + strand at 28.488 kb on + strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.489 kb on - strand, within EX28DRAFT_4221 at 28.562 kb on + strand, within EX28DRAFT_4221 at 28.797 kb on + strand, within EX28DRAFT_4221 at 28.798 kb on - strand, within EX28DRAFT_4221 at 28.892 kb on + strand at 28.913 kb on + strand at 28.931 kb on + strand at 28.942 kb on + strand at 28.964 kb on + strand at 28.985 kb on - strand at 29.108 kb on + strand at 29.108 kb on + strand at 29.109 kb on - strand at 29.294 kb on + strand, within EX28DRAFT_4222 at 29.343 kb on + strand, within EX28DRAFT_4222 at 29.437 kb on - strand, within EX28DRAFT_4222 at 29.439 kb on - strand, within EX28DRAFT_4222 at 29.441 kb on - strand, within EX28DRAFT_4222 at 29.444 kb on + strand, within EX28DRAFT_4222 at 29.445 kb on - strand, within EX28DRAFT_4222 at 29.484 kb on + strand, within EX28DRAFT_4222 at 29.489 kb on - strand, within EX28DRAFT_4222 at 29.637 kb on + strand, within EX28DRAFT_4222 at 29.638 kb on - strand, within EX28DRAFT_4222 at 29.770 kb on + strand at 29.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 26,956 - EX28DRAFT_4219 0.90 +0.4 26,957 + EX28DRAFT_4219 0.90 -0.3 26,957 + EX28DRAFT_4219 0.90 -0.4 26,957 + EX28DRAFT_4219 0.90 +0.1 27,007 - +0.8 27,007 - +1.2 27,024 + -0.1 27,025 - -0.1 27,025 - +0.1 27,025 - +0.7 27,032 - +0.2 27,032 - +0.3 27,198 + EX28DRAFT_4220 0.19 -0.0 27,199 - EX28DRAFT_4220 0.19 +0.5 27,202 + EX28DRAFT_4220 0.19 +0.5 27,202 + EX28DRAFT_4220 0.19 +0.1 27,202 + EX28DRAFT_4220 0.19 -1.2 27,202 + EX28DRAFT_4220 0.19 +0.9 27,203 - EX28DRAFT_4220 0.19 -0.2 27,355 - EX28DRAFT_4220 0.37 -1.0 27,364 + EX28DRAFT_4220 0.38 +0.6 27,365 - EX28DRAFT_4220 0.38 +0.3 27,586 + EX28DRAFT_4220 0.64 -0.2 27,586 + EX28DRAFT_4220 0.64 -0.0 27,799 + EX28DRAFT_4220 0.89 -0.3 27,800 - EX28DRAFT_4220 0.89 -0.0 27,992 + +1.4 28,488 + EX28DRAFT_4221 0.58 +0.4 28,489 - EX28DRAFT_4221 0.58 +1.6 28,489 - EX28DRAFT_4221 0.58 -0.7 28,562 + EX28DRAFT_4221 0.66 +0.7 28,797 + EX28DRAFT_4221 0.89 +0.7 28,798 - EX28DRAFT_4221 0.89 +1.0 28,892 + +0.0 28,913 + -0.1 28,931 + -0.7 28,942 + +0.2 28,964 + +0.6 28,985 - -0.9 29,108 + -0.3 29,108 + -0.6 29,109 - -0.3 29,294 + EX28DRAFT_4222 0.25 +1.8 29,343 + EX28DRAFT_4222 0.33 -0.8 29,437 - EX28DRAFT_4222 0.49 -0.4 29,439 - EX28DRAFT_4222 0.50 +1.2 29,441 - EX28DRAFT_4222 0.50 +0.2 29,444 + EX28DRAFT_4222 0.51 -0.0 29,445 - EX28DRAFT_4222 0.51 +0.0 29,484 + EX28DRAFT_4222 0.58 +0.3 29,489 - EX28DRAFT_4222 0.58 -0.7 29,637 + EX28DRAFT_4222 0.84 +0.2 29,638 - EX28DRAFT_4222 0.84 -0.7 29,770 + +0.1 29,849 - -0.2
Or see this region's nucleotide sequence