Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3497 and EX28DRAFT_3498 are separated by 125 nucleotides EX28DRAFT_3498 and EX28DRAFT_3499 are separated by 30 nucleotides
EX28DRAFT_3497: EX28DRAFT_3497 - hypothetical protein, at 159,747 to 160,988
_3497
EX28DRAFT_3498: EX28DRAFT_3498 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 161,114 to 161,935
_3498
EX28DRAFT_3499: EX28DRAFT_3499 - Arabinose efflux permease, at 161,966 to 163,585
_3499
Position (kb) 161
162 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 160.241 kb on - strand, within EX28DRAFT_3497 at 160.364 kb on + strand, within EX28DRAFT_3497 at 160.485 kb on + strand, within EX28DRAFT_3497 at 160.511 kb on + strand, within EX28DRAFT_3497 at 160.511 kb on + strand, within EX28DRAFT_3497 at 160.512 kb on - strand, within EX28DRAFT_3497 at 160.512 kb on - strand, within EX28DRAFT_3497 at 160.545 kb on + strand, within EX28DRAFT_3497 at 160.569 kb on + strand, within EX28DRAFT_3497 at 160.570 kb on - strand, within EX28DRAFT_3497 at 160.791 kb on + strand, within EX28DRAFT_3497 at 160.885 kb on + strand at 160.896 kb on - strand at 160.991 kb on + strand at 160.991 kb on + strand at 160.992 kb on - strand at 160.992 kb on - strand at 160.992 kb on - strand at 161.022 kb on + strand at 161.022 kb on + strand at 161.045 kb on + strand at 161.045 kb on + strand at 161.046 kb on - strand at 161.116 kb on - strand at 161.783 kb on + strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.812 kb on - strand, within EX28DRAFT_3498 at 161.895 kb on + strand at 161.899 kb on - strand at 161.935 kb on + strand at 161.935 kb on + strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.936 kb on - strand at 161.967 kb on + strand at 162.144 kb on + strand, within EX28DRAFT_3499 at 162.145 kb on - strand, within EX28DRAFT_3499 at 162.240 kb on + strand, within EX28DRAFT_3499 at 162.240 kb on + strand, within EX28DRAFT_3499 at 162.241 kb on - strand, within EX28DRAFT_3499 at 162.756 kb on - strand, within EX28DRAFT_3499 at 162.892 kb on - strand, within EX28DRAFT_3499
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 160,241 - EX28DRAFT_3497 0.40 -0.4 160,364 + EX28DRAFT_3497 0.50 -0.4 160,485 + EX28DRAFT_3497 0.59 -0.1 160,511 + EX28DRAFT_3497 0.62 +0.4 160,511 + EX28DRAFT_3497 0.62 +0.3 160,512 - EX28DRAFT_3497 0.62 +0.0 160,512 - EX28DRAFT_3497 0.62 -1.2 160,545 + EX28DRAFT_3497 0.64 -0.5 160,569 + EX28DRAFT_3497 0.66 +0.8 160,570 - EX28DRAFT_3497 0.66 +0.3 160,791 + EX28DRAFT_3497 0.84 +0.0 160,885 + -0.2 160,896 - -0.6 160,991 + +0.0 160,991 + -0.0 160,992 - +2.3 160,992 - -0.3 160,992 - +0.2 161,022 + +0.0 161,022 + +0.3 161,045 + +0.8 161,045 + -0.5 161,046 - -1.0 161,116 - +0.1 161,783 + EX28DRAFT_3498 0.81 +0.3 161,812 - EX28DRAFT_3498 0.85 -2.6 161,812 - EX28DRAFT_3498 0.85 +4.9 161,812 - EX28DRAFT_3498 0.85 +1.1 161,895 + +0.0 161,899 - +0.2 161,935 + -0.6 161,935 + +0.1 161,936 - +0.4 161,936 - -0.1 161,936 - -0.6 161,936 - +0.4 161,967 + +0.4 162,144 + EX28DRAFT_3499 0.11 +0.3 162,145 - EX28DRAFT_3499 0.11 -0.0 162,240 + EX28DRAFT_3499 0.17 +0.2 162,240 + EX28DRAFT_3499 0.17 -0.9 162,241 - EX28DRAFT_3499 0.17 +0.3 162,756 - EX28DRAFT_3499 0.49 +0.2 162,892 - EX28DRAFT_3499 0.57 -0.1
Or see this region's nucleotide sequence