Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3161

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3160 and EX28DRAFT_3161 are separated by 475 nucleotidesEX28DRAFT_3161 and EX28DRAFT_3162 are separated by 115 nucleotides EX28DRAFT_3160: EX28DRAFT_3160 - Glucuronate isomerase, at 462,750 to 464,162 _3160 EX28DRAFT_3161: EX28DRAFT_3161 - D-galactonate transporter, at 464,638 to 465,936 _3161 EX28DRAFT_3162: EX28DRAFT_3162 - Transcriptional regulators, at 466,052 to 466,828 _3162 Position (kb) 464 465 466Strain fitness (log2 ratio) -1 0 1 2 3at 463.861 kb on + strand, within EX28DRAFT_3160at 463.862 kb on - strand, within EX28DRAFT_3160at 463.985 kb on - strand, within EX28DRAFT_3160at 464.105 kb on - strandat 464.130 kb on + strandat 464.131 kb on - strandat 464.131 kb on - strandat 464.197 kb on + strandat 464.198 kb on - strandat 464.198 kb on - strandat 464.369 kb on - strandat 464.433 kb on - strandat 464.434 kb on + strandat 464.496 kb on + strandat 464.506 kb on + strandat 464.506 kb on + strandat 464.507 kb on - strandat 464.507 kb on - strandat 464.507 kb on - strandat 464.510 kb on + strandat 464.511 kb on - strandat 464.665 kb on + strandat 464.666 kb on - strandat 464.667 kb on + strandat 464.760 kb on + strandat 464.760 kb on + strandat 464.776 kb on + strand, within EX28DRAFT_3161at 464.777 kb on - strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.782 kb on + strand, within EX28DRAFT_3161at 464.798 kb on - strand, within EX28DRAFT_3161at 464.809 kb on + strand, within EX28DRAFT_3161at 464.811 kb on + strand, within EX28DRAFT_3161at 464.836 kb on + strand, within EX28DRAFT_3161at 464.836 kb on + strand, within EX28DRAFT_3161at 465.084 kb on - strand, within EX28DRAFT_3161at 465.238 kb on + strand, within EX28DRAFT_3161at 465.238 kb on + strand, within EX28DRAFT_3161at 465.239 kb on - strand, within EX28DRAFT_3161at 465.477 kb on + strand, within EX28DRAFT_3161at 465.613 kb on + strand, within EX28DRAFT_3161at 465.613 kb on + strand, within EX28DRAFT_3161at 465.614 kb on - strand, within EX28DRAFT_3161at 465.759 kb on + strand, within EX28DRAFT_3161at 465.859 kb on - strandat 465.954 kb on + strandat 466.077 kb on + strandat 466.079 kb on + strandat 466.079 kb on + strandat 466.210 kb on + strand, within EX28DRAFT_3162at 466.210 kb on + strand, within EX28DRAFT_3162at 466.326 kb on - strand, within EX28DRAFT_3162at 466.373 kb on - strand, within EX28DRAFT_3162at 466.663 kb on + strand, within EX28DRAFT_3162at 466.827 kb on - strandat 466.890 kb on + strandat 466.890 kb on + strandat 466.891 kb on - strandat 466.891 kb on - strandat 466.892 kb on + strandat 466.892 kb on + strandat 466.892 kb on + strandat 466.893 kb on - strandat 466.893 kb on - strandat 466.893 kb on - strandat 466.894 kb on + strandat 466.894 kb on + strandat 466.894 kb on + strandat 466.895 kb on - strandat 466.909 kb on + strandat 466.909 kb on + strandat 466.909 kb on + strandat 466.910 kb on - strandat 466.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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463,861 + EX28DRAFT_3160 0.79 -0.5
463,862 - EX28DRAFT_3160 0.79 -1.1
463,985 - EX28DRAFT_3160 0.87 +0.0
464,105 - -0.5
464,130 + +0.3
464,131 - -1.2
464,131 - -0.4
464,197 + -0.6
464,198 - -0.6
464,198 - +0.1
464,369 - -0.0
464,433 - -0.0
464,434 + +0.0
464,496 + +3.0
464,506 + +0.1
464,506 + -0.5
464,507 - +0.1
464,507 - -0.1
464,507 - -0.2
464,510 + -0.1
464,511 - +0.1
464,665 + -0.1
464,666 - +1.5
464,667 + +0.5
464,760 + +0.5
464,760 + -0.2
464,776 + EX28DRAFT_3161 0.11 +0.7
464,777 - EX28DRAFT_3161 0.11 +0.4
464,782 + EX28DRAFT_3161 0.11 +0.0
464,782 + EX28DRAFT_3161 0.11 +1.0
464,782 + EX28DRAFT_3161 0.11 -0.2
464,782 + EX28DRAFT_3161 0.11 -0.1
464,782 + EX28DRAFT_3161 0.11 -0.4
464,798 - EX28DRAFT_3161 0.12 -0.0
464,809 + EX28DRAFT_3161 0.13 -0.7
464,811 + EX28DRAFT_3161 0.13 -0.3
464,836 + EX28DRAFT_3161 0.15 +0.0
464,836 + EX28DRAFT_3161 0.15 -0.3
465,084 - EX28DRAFT_3161 0.34 +0.8
465,238 + EX28DRAFT_3161 0.46 -0.3
465,238 + EX28DRAFT_3161 0.46 +0.3
465,239 - EX28DRAFT_3161 0.46 +1.0
465,477 + EX28DRAFT_3161 0.65 +0.3
465,613 + EX28DRAFT_3161 0.75 -0.4
465,613 + EX28DRAFT_3161 0.75 +0.1
465,614 - EX28DRAFT_3161 0.75 -0.1
465,759 + EX28DRAFT_3161 0.86 +1.7
465,859 - -0.4
465,954 + +0.0
466,077 + -0.0
466,079 + -0.4
466,079 + +0.1
466,210 + EX28DRAFT_3162 0.20 +0.2
466,210 + EX28DRAFT_3162 0.20 +0.6
466,326 - EX28DRAFT_3162 0.35 -0.5
466,373 - EX28DRAFT_3162 0.41 +0.2
466,663 + EX28DRAFT_3162 0.79 -0.5
466,827 - -0.1
466,890 + +0.2
466,890 + +0.0
466,891 - +0.3
466,891 - -0.1
466,892 + -0.6
466,892 + +0.0
466,892 + +1.8
466,893 - +0.7
466,893 - -0.2
466,893 - +0.4
466,894 + +0.8
466,894 + +0.3
466,894 + -0.4
466,895 - -0.0
466,909 + +0.0
466,909 + +0.0
466,909 + -0.5
466,910 - +0.5
466,910 - +0.7

Or see this region's nucleotide sequence