Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2974 and EX28DRAFT_2975 are separated by 224 nucleotides EX28DRAFT_2975 and EX28DRAFT_2976 are separated by 210 nucleotides
EX28DRAFT_2974: EX28DRAFT_2974 - transketolase, bacterial and yeast, at 284,235 to 286,226
_2974
EX28DRAFT_2975: EX28DRAFT_2975 - Zn-dependent protease with chaperone function, at 286,451 to 287,257
_2975
EX28DRAFT_2976: EX28DRAFT_2976 - outer membrane porin, OprD family, at 287,468 to 288,736
_2976
Position (kb) 286
287
288 Strain fitness (log2 ratio) -1
0
1 at 285.682 kb on + strand, within EX28DRAFT_2974 at 285.792 kb on + strand, within EX28DRAFT_2974 at 285.792 kb on + strand, within EX28DRAFT_2974 at 285.793 kb on - strand, within EX28DRAFT_2974 at 285.941 kb on + strand, within EX28DRAFT_2974 at 286.010 kb on + strand, within EX28DRAFT_2974 at 286.137 kb on - strand at 286.215 kb on - strand at 286.332 kb on - strand at 286.332 kb on - strand at 286.332 kb on - strand at 286.332 kb on - strand at 286.332 kb on - strand at 286.423 kb on - strand at 286.423 kb on - strand at 286.423 kb on - strand at 286.423 kb on - strand at 286.427 kb on - strand at 286.468 kb on + strand at 286.469 kb on - strand at 286.469 kb on - strand at 286.477 kb on + strand at 286.515 kb on + strand at 286.657 kb on + strand, within EX28DRAFT_2975 at 286.658 kb on - strand, within EX28DRAFT_2975 at 286.664 kb on - strand, within EX28DRAFT_2975 at 286.699 kb on + strand, within EX28DRAFT_2975 at 286.699 kb on + strand, within EX28DRAFT_2975 at 286.700 kb on - strand, within EX28DRAFT_2975 at 286.700 kb on - strand, within EX28DRAFT_2975 at 286.704 kb on - strand, within EX28DRAFT_2975 at 286.778 kb on + strand, within EX28DRAFT_2975 at 286.779 kb on - strand, within EX28DRAFT_2975 at 286.779 kb on - strand, within EX28DRAFT_2975 at 286.779 kb on - strand, within EX28DRAFT_2975 at 286.779 kb on - strand, within EX28DRAFT_2975 at 286.779 kb on - strand, within EX28DRAFT_2975 at 286.833 kb on - strand, within EX28DRAFT_2975 at 287.038 kb on + strand, within EX28DRAFT_2975 at 287.081 kb on + strand, within EX28DRAFT_2975 at 287.081 kb on + strand, within EX28DRAFT_2975 at 287.081 kb on + strand, within EX28DRAFT_2975 at 287.088 kb on - strand, within EX28DRAFT_2975 at 287.114 kb on - strand, within EX28DRAFT_2975 at 287.221 kb on + strand at 287.261 kb on + strand at 287.310 kb on + strand at 287.383 kb on + strand at 287.439 kb on + strand at 287.481 kb on + strand at 287.481 kb on + strand at 287.594 kb on + strand at 287.594 kb on + strand at 287.594 kb on + strand at 287.594 kb on + strand at 287.595 kb on - strand, within EX28DRAFT_2976 at 287.595 kb on - strand, within EX28DRAFT_2976 at 287.845 kb on + strand, within EX28DRAFT_2976 at 287.846 kb on - strand, within EX28DRAFT_2976 at 287.846 kb on - strand, within EX28DRAFT_2976 at 287.894 kb on - strand, within EX28DRAFT_2976 at 287.899 kb on + strand, within EX28DRAFT_2976 at 287.933 kb on + strand, within EX28DRAFT_2976 at 287.990 kb on + strand, within EX28DRAFT_2976 at 288.068 kb on + strand, within EX28DRAFT_2976 at 288.138 kb on - strand, within EX28DRAFT_2976 at 288.205 kb on + strand, within EX28DRAFT_2976 at 288.205 kb on + strand, within EX28DRAFT_2976
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 285,682 + EX28DRAFT_2974 0.73 +0.2 285,792 + EX28DRAFT_2974 0.78 +0.2 285,792 + EX28DRAFT_2974 0.78 -0.7 285,793 - EX28DRAFT_2974 0.78 -1.2 285,941 + EX28DRAFT_2974 0.86 -0.7 286,010 + EX28DRAFT_2974 0.89 -0.6 286,137 - +1.4 286,215 - +0.5 286,332 - +0.2 286,332 - -0.1 286,332 - -0.2 286,332 - -0.1 286,332 - +0.4 286,423 - +1.1 286,423 - +0.1 286,423 - +0.6 286,423 - +0.0 286,427 - -0.1 286,468 + +0.1 286,469 - +0.3 286,469 - -0.2 286,477 + -0.2 286,515 + -0.1 286,657 + EX28DRAFT_2975 0.26 +1.4 286,658 - EX28DRAFT_2975 0.26 -0.2 286,664 - EX28DRAFT_2975 0.26 +1.5 286,699 + EX28DRAFT_2975 0.31 +0.6 286,699 + EX28DRAFT_2975 0.31 -0.4 286,700 - EX28DRAFT_2975 0.31 -0.0 286,700 - EX28DRAFT_2975 0.31 -0.9 286,704 - EX28DRAFT_2975 0.31 +0.0 286,778 + EX28DRAFT_2975 0.41 +0.1 286,779 - EX28DRAFT_2975 0.41 -0.1 286,779 - EX28DRAFT_2975 0.41 +0.3 286,779 - EX28DRAFT_2975 0.41 -1.1 286,779 - EX28DRAFT_2975 0.41 +0.2 286,779 - EX28DRAFT_2975 0.41 +0.1 286,833 - EX28DRAFT_2975 0.47 -0.1 287,038 + EX28DRAFT_2975 0.73 +0.1 287,081 + EX28DRAFT_2975 0.78 +0.4 287,081 + EX28DRAFT_2975 0.78 -0.4 287,081 + EX28DRAFT_2975 0.78 -0.4 287,088 - EX28DRAFT_2975 0.79 +0.6 287,114 - EX28DRAFT_2975 0.82 +0.3 287,221 + -0.2 287,261 + +0.7 287,310 + +0.3 287,383 + +1.3 287,439 + -0.2 287,481 + +0.1 287,481 + +0.0 287,594 + +0.6 287,594 + -0.0 287,594 + +0.2 287,594 + -0.2 287,595 - EX28DRAFT_2976 0.10 -0.3 287,595 - EX28DRAFT_2976 0.10 -0.1 287,845 + EX28DRAFT_2976 0.30 -0.2 287,846 - EX28DRAFT_2976 0.30 +0.2 287,846 - EX28DRAFT_2976 0.30 +0.8 287,894 - EX28DRAFT_2976 0.34 -0.1 287,899 + EX28DRAFT_2976 0.34 -0.2 287,933 + EX28DRAFT_2976 0.37 -0.4 287,990 + EX28DRAFT_2976 0.41 +0.2 288,068 + EX28DRAFT_2976 0.47 -0.1 288,138 - EX28DRAFT_2976 0.53 +0.0 288,205 + EX28DRAFT_2976 0.58 +0.7 288,205 + EX28DRAFT_2976 0.58 +0.7
Or see this region's nucleotide sequence