Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2967

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2966 and EX28DRAFT_2967 are separated by 127 nucleotidesEX28DRAFT_2967 and EX28DRAFT_2968 are separated by 48 nucleotidesEX28DRAFT_2968 and EX28DRAFT_2969 are separated by 91 nucleotides EX28DRAFT_2966: EX28DRAFT_2966 - ribose-5-phosphate isomerase (EC 5.3.1.6), at 276,106 to 276,765 _2966 EX28DRAFT_2967: EX28DRAFT_2967 - transcriptional regulator, ArgP family, at 276,893 to 277,786 _2967 EX28DRAFT_2968: EX28DRAFT_2968 - Uncharacterized conserved protein, at 277,835 to 278,575 _2968 EX28DRAFT_2969: EX28DRAFT_2969 - L-lysine exporter, at 278,667 to 279,302 _2969 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1at 275.904 kb on - strandat 275.927 kb on + strandat 276.112 kb on + strandat 276.113 kb on - strandat 276.805 kb on + strandat 276.805 kb on + strandat 276.805 kb on + strandat 276.806 kb on - strandat 276.806 kb on - strandat 276.806 kb on - strandat 276.806 kb on - strandat 276.854 kb on + strandat 276.864 kb on + strandat 276.864 kb on + strandat 276.875 kb on - strandat 276.918 kb on + strandat 276.918 kb on + strandat 276.918 kb on + strandat 276.938 kb on - strandat 277.007 kb on - strand, within EX28DRAFT_2967at 277.676 kb on + strand, within EX28DRAFT_2967at 277.694 kb on + strand, within EX28DRAFT_2967at 277.695 kb on - strand, within EX28DRAFT_2967at 277.784 kb on + strandat 277.836 kb on + strandat 277.847 kb on - strandat 277.932 kb on + strand, within EX28DRAFT_2968at 277.932 kb on + strand, within EX28DRAFT_2968at 277.932 kb on + strand, within EX28DRAFT_2968at 277.933 kb on - strand, within EX28DRAFT_2968at 278.002 kb on + strand, within EX28DRAFT_2968at 278.003 kb on - strand, within EX28DRAFT_2968at 278.003 kb on - strand, within EX28DRAFT_2968at 278.026 kb on - strand, within EX28DRAFT_2968at 278.200 kb on + strand, within EX28DRAFT_2968at 278.200 kb on + strand, within EX28DRAFT_2968at 278.201 kb on - strand, within EX28DRAFT_2968at 278.206 kb on + strand, within EX28DRAFT_2968at 278.206 kb on + strand, within EX28DRAFT_2968at 278.270 kb on - strand, within EX28DRAFT_2968at 278.286 kb on + strand, within EX28DRAFT_2968at 278.287 kb on - strand, within EX28DRAFT_2968at 278.299 kb on + strand, within EX28DRAFT_2968at 278.299 kb on + strand, within EX28DRAFT_2968at 278.300 kb on - strand, within EX28DRAFT_2968at 278.303 kb on + strand, within EX28DRAFT_2968at 278.303 kb on + strand, within EX28DRAFT_2968at 278.304 kb on - strand, within EX28DRAFT_2968at 278.319 kb on + strand, within EX28DRAFT_2968at 278.321 kb on - strand, within EX28DRAFT_2968at 278.329 kb on + strand, within EX28DRAFT_2968at 278.330 kb on - strand, within EX28DRAFT_2968at 278.333 kb on + strand, within EX28DRAFT_2968at 278.362 kb on - strand, within EX28DRAFT_2968at 278.541 kb on - strandat 278.544 kb on - strandat 278.544 kb on - strandat 278.579 kb on + strandat 278.633 kb on - strandat 278.656 kb on + strandat 278.656 kb on + strandat 278.657 kb on - strandat 278.750 kb on + strand, within EX28DRAFT_2969at 278.750 kb on + strand, within EX28DRAFT_2969at 278.750 kb on + strand, within EX28DRAFT_2969at 278.751 kb on - strand, within EX28DRAFT_2969at 278.751 kb on - strand, within EX28DRAFT_2969at 278.754 kb on + strand, within EX28DRAFT_2969at 278.755 kb on - strand, within EX28DRAFT_2969

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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275,904 - +0.3
275,927 + -2.4
276,112 + +0.1
276,113 - -0.3
276,805 + +0.0
276,805 + +0.9
276,805 + -1.8
276,806 - -1.0
276,806 - -1.1
276,806 - -0.1
276,806 - -0.1
276,854 + +0.3
276,864 + +0.1
276,864 + +0.2
276,875 - -0.3
276,918 + -0.6
276,918 + -1.9
276,918 + +0.0
276,938 - -0.4
277,007 - EX28DRAFT_2967 0.13 -0.5
277,676 + EX28DRAFT_2967 0.88 -0.5
277,694 + EX28DRAFT_2967 0.90 -1.0
277,695 - EX28DRAFT_2967 0.90 -1.1
277,784 + +0.2
277,836 + +0.2
277,847 - +0.5
277,932 + EX28DRAFT_2968 0.13 -0.5
277,932 + EX28DRAFT_2968 0.13 +0.3
277,932 + EX28DRAFT_2968 0.13 -0.9
277,933 - EX28DRAFT_2968 0.13 +0.2
278,002 + EX28DRAFT_2968 0.23 -0.8
278,003 - EX28DRAFT_2968 0.23 +0.1
278,003 - EX28DRAFT_2968 0.23 +0.2
278,026 - EX28DRAFT_2968 0.26 -0.0
278,200 + EX28DRAFT_2968 0.49 +0.7
278,200 + EX28DRAFT_2968 0.49 -0.4
278,201 - EX28DRAFT_2968 0.49 +0.1
278,206 + EX28DRAFT_2968 0.50 -0.4
278,206 + EX28DRAFT_2968 0.50 -0.0
278,270 - EX28DRAFT_2968 0.59 -0.3
278,286 + EX28DRAFT_2968 0.61 +0.2
278,287 - EX28DRAFT_2968 0.61 +0.1
278,299 + EX28DRAFT_2968 0.63 -0.2
278,299 + EX28DRAFT_2968 0.63 -0.2
278,300 - EX28DRAFT_2968 0.63 -0.1
278,303 + EX28DRAFT_2968 0.63 +0.0
278,303 + EX28DRAFT_2968 0.63 -0.2
278,304 - EX28DRAFT_2968 0.63 +0.2
278,319 + EX28DRAFT_2968 0.65 +0.9
278,321 - EX28DRAFT_2968 0.66 -0.3
278,329 + EX28DRAFT_2968 0.67 +0.0
278,330 - EX28DRAFT_2968 0.67 +0.1
278,333 + EX28DRAFT_2968 0.67 -0.2
278,362 - EX28DRAFT_2968 0.71 -0.2
278,541 - +0.1
278,544 - -0.0
278,544 - -0.4
278,579 + +1.0
278,633 - +0.3
278,656 + +0.1
278,656 + +1.0
278,657 - +0.3
278,750 + EX28DRAFT_2969 0.13 +0.1
278,750 + EX28DRAFT_2969 0.13 -0.5
278,750 + EX28DRAFT_2969 0.13 +0.4
278,751 - EX28DRAFT_2969 0.13 -0.1
278,751 - EX28DRAFT_2969 0.13 -1.3
278,754 + EX28DRAFT_2969 0.14 +0.3
278,755 - EX28DRAFT_2969 0.14 +0.6

Or see this region's nucleotide sequence