Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2811

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2809 and EX28DRAFT_2810 overlap by 4 nucleotidesEX28DRAFT_2810 and EX28DRAFT_2811 overlap by 1 nucleotidesEX28DRAFT_2811 and EX28DRAFT_2812 are separated by 9 nucleotides EX28DRAFT_2809: EX28DRAFT_2809 - Formate hydrogenlyase maturation protein HycH, at 113,271 to 113,681 _2809 EX28DRAFT_2810: EX28DRAFT_2810 - Ni,Fe-hydrogenase III small subunit, at 113,678 to 114,445 _2810 EX28DRAFT_2811: EX28DRAFT_2811 - Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I), at 114,445 to 114,987 _2811 EX28DRAFT_2812: EX28DRAFT_2812 - Ni,Fe-hydrogenase III large subunit, at 114,997 to 116,706 _2812 Position (kb) 114 115Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 113.590 kb on + strand, within EX28DRAFT_2809at 113.590 kb on + strand, within EX28DRAFT_2809at 113.593 kb on + strand, within EX28DRAFT_2809at 113.594 kb on - strand, within EX28DRAFT_2809at 113.594 kb on - strand, within EX28DRAFT_2809at 113.640 kb on - strand, within EX28DRAFT_2809at 113.646 kb on - strandat 113.705 kb on - strandat 113.705 kb on - strandat 114.024 kb on + strand, within EX28DRAFT_2810at 114.331 kb on - strand, within EX28DRAFT_2810at 114.331 kb on - strand, within EX28DRAFT_2810at 114.463 kb on - strandat 114.701 kb on + strand, within EX28DRAFT_2811at 114.702 kb on - strand, within EX28DRAFT_2811at 114.702 kb on - strand, within EX28DRAFT_2811at 114.777 kb on + strand, within EX28DRAFT_2811at 114.778 kb on - strand, within EX28DRAFT_2811at 114.981 kb on + strandat 114.982 kb on - strandat 114.982 kb on - strandat 114.982 kb on - strandat 114.999 kb on - strandat 115.049 kb on + strandat 115.113 kb on - strandat 115.173 kb on + strand, within EX28DRAFT_2812at 115.174 kb on - strand, within EX28DRAFT_2812at 115.174 kb on - strand, within EX28DRAFT_2812at 115.175 kb on + strand, within EX28DRAFT_2812at 115.175 kb on + strand, within EX28DRAFT_2812at 115.175 kb on + strand, within EX28DRAFT_2812at 115.176 kb on - strand, within EX28DRAFT_2812at 115.199 kb on + strand, within EX28DRAFT_2812at 115.317 kb on - strand, within EX28DRAFT_2812at 115.733 kb on + strand, within EX28DRAFT_2812at 115.804 kb on - strand, within EX28DRAFT_2812at 115.953 kb on - strand, within EX28DRAFT_2812

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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113,590 + EX28DRAFT_2809 0.78 -0.1
113,590 + EX28DRAFT_2809 0.78 +0.8
113,593 + EX28DRAFT_2809 0.78 -0.2
113,594 - EX28DRAFT_2809 0.79 +0.3
113,594 - EX28DRAFT_2809 0.79 -0.3
113,640 - EX28DRAFT_2809 0.90 +0.3
113,646 - -4.8
113,705 - +0.2
113,705 - +0.0
114,024 + EX28DRAFT_2810 0.45 -0.3
114,331 - EX28DRAFT_2810 0.85 -0.6
114,331 - EX28DRAFT_2810 0.85 +0.2
114,463 - -0.0
114,701 + EX28DRAFT_2811 0.47 +0.2
114,702 - EX28DRAFT_2811 0.47 -0.1
114,702 - EX28DRAFT_2811 0.47 +0.9
114,777 + EX28DRAFT_2811 0.61 +0.4
114,778 - EX28DRAFT_2811 0.61 +0.1
114,981 + -0.9
114,982 - +0.3
114,982 - -0.3
114,982 - -0.1
114,999 - +0.5
115,049 + +0.2
115,113 - +0.1
115,173 + EX28DRAFT_2812 0.10 -0.3
115,174 - EX28DRAFT_2812 0.10 -0.0
115,174 - EX28DRAFT_2812 0.10 -0.1
115,175 + EX28DRAFT_2812 0.10 +1.3
115,175 + EX28DRAFT_2812 0.10 -0.9
115,175 + EX28DRAFT_2812 0.10 -0.1
115,176 - EX28DRAFT_2812 0.10 +0.5
115,199 + EX28DRAFT_2812 0.12 -1.7
115,317 - EX28DRAFT_2812 0.19 -0.9
115,733 + EX28DRAFT_2812 0.43 +0.7
115,804 - EX28DRAFT_2812 0.47 -0.1
115,953 - EX28DRAFT_2812 0.56 +0.0

Or see this region's nucleotide sequence