Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2626 and EX28DRAFT_2627 are separated by 17 nucleotides EX28DRAFT_2627 and EX28DRAFT_2628 overlap by 4 nucleotides EX28DRAFT_2628 and EX28DRAFT_2629 are separated by 3 nucleotides
EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168
_2626
EX28DRAFT_2627: EX28DRAFT_2627 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,666,186 to 2,667,157
_2627
EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305
_2628
EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370
_2629
Position (kb)
2667
2668
2669 Strain fitness (log2 ratio)
-1
0
1 at 2666.260 kb on + strand at 2666.839 kb on + strand, within EX28DRAFT_2627 at 2666.859 kb on + strand, within EX28DRAFT_2627 at 2666.866 kb on + strand, within EX28DRAFT_2627 at 2666.953 kb on - strand, within EX28DRAFT_2627 at 2667.100 kb on + strand at 2667.100 kb on + strand at 2667.101 kb on - strand at 2667.101 kb on - strand at 2667.121 kb on + strand at 2667.135 kb on + strand at 2667.135 kb on + strand at 2667.139 kb on - strand at 2667.180 kb on + strand at 2667.248 kb on + strand at 2667.249 kb on - strand at 2667.276 kb on + strand, within EX28DRAFT_2628 at 2667.276 kb on + strand, within EX28DRAFT_2628 at 2667.276 kb on + strand, within EX28DRAFT_2628 at 2667.277 kb on - strand, within EX28DRAFT_2628 at 2667.309 kb on - strand, within EX28DRAFT_2628 at 2667.343 kb on - strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.392 kb on - strand, within EX28DRAFT_2628 at 2667.432 kb on + strand, within EX28DRAFT_2628 at 2667.548 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.688 kb on + strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.721 kb on + strand, within EX28DRAFT_2628 at 2667.722 kb on - strand, within EX28DRAFT_2628 at 2667.738 kb on + strand, within EX28DRAFT_2628 at 2667.808 kb on + strand, within EX28DRAFT_2628 at 2667.834 kb on + strand, within EX28DRAFT_2628 at 2667.848 kb on - strand, within EX28DRAFT_2628 at 2667.982 kb on - strand, within EX28DRAFT_2628 at 2668.106 kb on - strand, within EX28DRAFT_2628 at 2668.158 kb on - strand, within EX28DRAFT_2628 at 2668.207 kb on + strand at 2668.794 kb on - strand, within EX28DRAFT_2629 at 2668.798 kb on - strand, within EX28DRAFT_2629 at 2669.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,666,260 + -0.0 2,666,839 + EX28DRAFT_2627 0.67 +0.4 2,666,859 + EX28DRAFT_2627 0.69 -0.2 2,666,866 + EX28DRAFT_2627 0.70 -0.1 2,666,953 - EX28DRAFT_2627 0.79 -0.1 2,667,100 + -0.4 2,667,100 + +0.6 2,667,101 - -0.3 2,667,101 - -0.1 2,667,121 + -0.1 2,667,135 + +0.7 2,667,135 + +0.5 2,667,139 - -0.4 2,667,180 + -0.8 2,667,248 + +0.1 2,667,249 - -0.2 2,667,276 + EX28DRAFT_2628 0.11 +0.2 2,667,276 + EX28DRAFT_2628 0.11 -0.1 2,667,276 + EX28DRAFT_2628 0.11 -0.1 2,667,277 - EX28DRAFT_2628 0.11 +0.0 2,667,309 - EX28DRAFT_2628 0.13 +0.2 2,667,343 - EX28DRAFT_2628 0.16 +0.3 2,667,391 + EX28DRAFT_2628 0.21 +0.0 2,667,391 + EX28DRAFT_2628 0.21 -0.4 2,667,392 - EX28DRAFT_2628 0.21 -0.1 2,667,432 + EX28DRAFT_2628 0.24 +0.0 2,667,548 + EX28DRAFT_2628 0.34 -0.6 2,667,554 + EX28DRAFT_2628 0.35 -0.1 2,667,554 + EX28DRAFT_2628 0.35 -0.2 2,667,598 + EX28DRAFT_2628 0.39 +0.3 2,667,598 + EX28DRAFT_2628 0.39 +0.1 2,667,688 + EX28DRAFT_2628 0.46 +0.2 2,667,689 - EX28DRAFT_2628 0.46 +0.8 2,667,689 - EX28DRAFT_2628 0.46 -0.8 2,667,689 - EX28DRAFT_2628 0.46 -0.5 2,667,689 - EX28DRAFT_2628 0.46 -0.4 2,667,689 - EX28DRAFT_2628 0.46 -0.7 2,667,721 + EX28DRAFT_2628 0.49 -0.2 2,667,722 - EX28DRAFT_2628 0.49 -0.1 2,667,738 + EX28DRAFT_2628 0.51 -0.1 2,667,808 + EX28DRAFT_2628 0.57 +0.0 2,667,834 + EX28DRAFT_2628 0.59 -0.5 2,667,848 - EX28DRAFT_2628 0.60 +0.6 2,667,982 - EX28DRAFT_2628 0.72 +0.0 2,668,106 - EX28DRAFT_2628 0.83 -0.1 2,668,158 - EX28DRAFT_2628 0.87 +0.5 2,668,207 + -0.5 2,668,794 - EX28DRAFT_2629 0.46 +0.7 2,668,798 - EX28DRAFT_2629 0.46 -0.2 2,669,270 + -0.9
Or see this region's nucleotide sequence