Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2597

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2596 and EX28DRAFT_2597 are separated by 115 nucleotidesEX28DRAFT_2597 and EX28DRAFT_2598 are separated by 204 nucleotides EX28DRAFT_2596: EX28DRAFT_2596 - ABC-type long-chain fatty acid transport system, fused permease and ATPase components, at 2,629,703 to 2,630,923 _2596 EX28DRAFT_2597: EX28DRAFT_2597 - Amidases related to nicotinamidase, at 2,631,039 to 2,631,572 _2597 EX28DRAFT_2598: EX28DRAFT_2598 - Beta-lactamase class C and other penicillin binding proteins, at 2,631,777 to 2,632,937 _2598 Position (kb) 2631 2632Strain fitness (log2 ratio) -1 0 1 2at 2630.202 kb on + strand, within EX28DRAFT_2596at 2630.203 kb on - strand, within EX28DRAFT_2596at 2630.203 kb on - strand, within EX28DRAFT_2596at 2630.207 kb on + strand, within EX28DRAFT_2596at 2630.207 kb on + strand, within EX28DRAFT_2596at 2630.208 kb on - strand, within EX28DRAFT_2596at 2630.303 kb on + strand, within EX28DRAFT_2596at 2630.403 kb on + strand, within EX28DRAFT_2596at 2630.403 kb on + strand, within EX28DRAFT_2596at 2630.403 kb on + strand, within EX28DRAFT_2596at 2630.403 kb on + strand, within EX28DRAFT_2596at 2630.404 kb on - strand, within EX28DRAFT_2596at 2630.404 kb on - strand, within EX28DRAFT_2596at 2630.404 kb on - strand, within EX28DRAFT_2596at 2630.404 kb on - strand, within EX28DRAFT_2596at 2630.520 kb on + strand, within EX28DRAFT_2596at 2630.520 kb on + strand, within EX28DRAFT_2596at 2630.520 kb on + strand, within EX28DRAFT_2596at 2630.521 kb on - strand, within EX28DRAFT_2596at 2630.521 kb on - strand, within EX28DRAFT_2596at 2630.533 kb on + strand, within EX28DRAFT_2596at 2630.543 kb on - strand, within EX28DRAFT_2596at 2630.543 kb on - strand, within EX28DRAFT_2596at 2630.590 kb on - strand, within EX28DRAFT_2596at 2630.642 kb on - strand, within EX28DRAFT_2596at 2630.646 kb on - strand, within EX28DRAFT_2596at 2630.692 kb on - strand, within EX28DRAFT_2596at 2630.733 kb on + strand, within EX28DRAFT_2596at 2630.733 kb on + strand, within EX28DRAFT_2596at 2630.733 kb on + strand, within EX28DRAFT_2596at 2630.734 kb on - strand, within EX28DRAFT_2596at 2630.734 kb on - strand, within EX28DRAFT_2596at 2630.734 kb on - strand, within EX28DRAFT_2596at 2630.736 kb on + strand, within EX28DRAFT_2596at 2630.736 kb on + strand, within EX28DRAFT_2596at 2630.755 kb on - strand, within EX28DRAFT_2596at 2630.755 kb on - strand, within EX28DRAFT_2596at 2630.872 kb on + strandat 2630.872 kb on + strandat 2630.872 kb on + strandat 2630.918 kb on - strandat 2630.918 kb on - strandat 2630.918 kb on - strandat 2630.923 kb on + strandat 2630.923 kb on + strandat 2630.923 kb on + strandat 2630.924 kb on - strandat 2631.176 kb on + strand, within EX28DRAFT_2597at 2631.176 kb on + strand, within EX28DRAFT_2597at 2631.177 kb on - strand, within EX28DRAFT_2597at 2631.177 kb on - strand, within EX28DRAFT_2597at 2631.179 kb on + strand, within EX28DRAFT_2597at 2631.179 kb on + strand, within EX28DRAFT_2597at 2631.230 kb on + strand, within EX28DRAFT_2597at 2631.325 kb on + strand, within EX28DRAFT_2597at 2631.325 kb on + strand, within EX28DRAFT_2597at 2631.325 kb on + strand, within EX28DRAFT_2597at 2631.326 kb on - strand, within EX28DRAFT_2597at 2631.326 kb on - strand, within EX28DRAFT_2597at 2631.355 kb on + strand, within EX28DRAFT_2597at 2631.525 kb on + strandat 2631.649 kb on + strandat 2631.650 kb on - strandat 2631.660 kb on + strandat 2631.664 kb on + strandat 2631.665 kb on - strandat 2631.695 kb on - strandat 2631.728 kb on + strandat 2631.731 kb on + strandat 2631.732 kb on - strandat 2631.733 kb on + strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.734 kb on - strandat 2631.737 kb on + strandat 2631.737 kb on + strandat 2631.745 kb on - strandat 2631.745 kb on - strandat 2631.866 kb on - strandat 2631.900 kb on - strand, within EX28DRAFT_2598at 2631.900 kb on - strand, within EX28DRAFT_2598at 2631.903 kb on + strand, within EX28DRAFT_2598at 2631.904 kb on - strand, within EX28DRAFT_2598at 2631.996 kb on - strand, within EX28DRAFT_2598at 2632.119 kb on + strand, within EX28DRAFT_2598at 2632.120 kb on - strand, within EX28DRAFT_2598at 2632.150 kb on - strand, within EX28DRAFT_2598at 2632.150 kb on - strand, within EX28DRAFT_2598at 2632.240 kb on + strand, within EX28DRAFT_2598at 2632.240 kb on + strand, within EX28DRAFT_2598at 2632.240 kb on + strand, within EX28DRAFT_2598at 2632.241 kb on - strand, within EX28DRAFT_2598at 2632.241 kb on - strand, within EX28DRAFT_2598at 2632.241 kb on - strand, within EX28DRAFT_2598at 2632.276 kb on - strand, within EX28DRAFT_2598at 2632.324 kb on - strand, within EX28DRAFT_2598at 2632.383 kb on + strand, within EX28DRAFT_2598at 2632.436 kb on + strand, within EX28DRAFT_2598at 2632.503 kb on - strand, within EX28DRAFT_2598at 2632.506 kb on - strand, within EX28DRAFT_2598

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,630,202 + EX28DRAFT_2596 0.41 +0.3
2,630,203 - EX28DRAFT_2596 0.41 -0.4
2,630,203 - EX28DRAFT_2596 0.41 -0.7
2,630,207 + EX28DRAFT_2596 0.41 +0.1
2,630,207 + EX28DRAFT_2596 0.41 -0.4
2,630,208 - EX28DRAFT_2596 0.41 -0.0
2,630,303 + EX28DRAFT_2596 0.49 -0.3
2,630,403 + EX28DRAFT_2596 0.57 -0.0
2,630,403 + EX28DRAFT_2596 0.57 +0.9
2,630,403 + EX28DRAFT_2596 0.57 +0.9
2,630,403 + EX28DRAFT_2596 0.57 -0.3
2,630,404 - EX28DRAFT_2596 0.57 -0.4
2,630,404 - EX28DRAFT_2596 0.57 +0.4
2,630,404 - EX28DRAFT_2596 0.57 -1.5
2,630,404 - EX28DRAFT_2596 0.57 +0.3
2,630,520 + EX28DRAFT_2596 0.67 -0.1
2,630,520 + EX28DRAFT_2596 0.67 +0.7
2,630,520 + EX28DRAFT_2596 0.67 -0.4
2,630,521 - EX28DRAFT_2596 0.67 -0.5
2,630,521 - EX28DRAFT_2596 0.67 +0.5
2,630,533 + EX28DRAFT_2596 0.68 -0.4
2,630,543 - EX28DRAFT_2596 0.69 +1.9
2,630,543 - EX28DRAFT_2596 0.69 +0.4
2,630,590 - EX28DRAFT_2596 0.73 -0.8
2,630,642 - EX28DRAFT_2596 0.77 +0.2
2,630,646 - EX28DRAFT_2596 0.77 -0.4
2,630,692 - EX28DRAFT_2596 0.81 -0.2
2,630,733 + EX28DRAFT_2596 0.84 -0.3
2,630,733 + EX28DRAFT_2596 0.84 -0.4
2,630,733 + EX28DRAFT_2596 0.84 -0.5
2,630,734 - EX28DRAFT_2596 0.84 -0.4
2,630,734 - EX28DRAFT_2596 0.84 -0.3
2,630,734 - EX28DRAFT_2596 0.84 +0.2
2,630,736 + EX28DRAFT_2596 0.85 -0.0
2,630,736 + EX28DRAFT_2596 0.85 -0.3
2,630,755 - EX28DRAFT_2596 0.86 -0.3
2,630,755 - EX28DRAFT_2596 0.86 -0.1
2,630,872 + -0.3
2,630,872 + +0.1
2,630,872 + -0.6
2,630,918 - -0.4
2,630,918 - -0.3
2,630,918 - -0.0
2,630,923 + -1.7
2,630,923 + -0.2
2,630,923 + -0.3
2,630,924 - -0.1
2,631,176 + EX28DRAFT_2597 0.26 -0.0
2,631,176 + EX28DRAFT_2597 0.26 +0.4
2,631,177 - EX28DRAFT_2597 0.26 -0.6
2,631,177 - EX28DRAFT_2597 0.26 -0.2
2,631,179 + EX28DRAFT_2597 0.26 -0.2
2,631,179 + EX28DRAFT_2597 0.26 +0.8
2,631,230 + EX28DRAFT_2597 0.36 -0.0
2,631,325 + EX28DRAFT_2597 0.54 -0.0
2,631,325 + EX28DRAFT_2597 0.54 +0.4
2,631,325 + EX28DRAFT_2597 0.54 +1.3
2,631,326 - EX28DRAFT_2597 0.54 -0.1
2,631,326 - EX28DRAFT_2597 0.54 -0.1
2,631,355 + EX28DRAFT_2597 0.59 +0.2
2,631,525 + +0.9
2,631,649 + -0.3
2,631,650 - -0.8
2,631,660 + -0.0
2,631,664 + +0.5
2,631,665 - +0.4
2,631,695 - -0.9
2,631,728 + -0.1
2,631,731 + -0.2
2,631,732 - +0.2
2,631,733 + -0.7
2,631,734 - +0.4
2,631,734 - +1.7
2,631,734 - +0.1
2,631,734 - -0.1
2,631,734 - +0.0
2,631,734 - -0.4
2,631,734 - -0.3
2,631,734 - +0.0
2,631,737 + +0.1
2,631,737 + -0.1
2,631,745 - -0.7
2,631,745 - +0.1
2,631,866 - -0.8
2,631,900 - EX28DRAFT_2598 0.11 -0.6
2,631,900 - EX28DRAFT_2598 0.11 +0.1
2,631,903 + EX28DRAFT_2598 0.11 -0.9
2,631,904 - EX28DRAFT_2598 0.11 -0.6
2,631,996 - EX28DRAFT_2598 0.19 -0.0
2,632,119 + EX28DRAFT_2598 0.29 -0.2
2,632,120 - EX28DRAFT_2598 0.30 +0.1
2,632,150 - EX28DRAFT_2598 0.32 +1.4
2,632,150 - EX28DRAFT_2598 0.32 +0.4
2,632,240 + EX28DRAFT_2598 0.40 +0.5
2,632,240 + EX28DRAFT_2598 0.40 +0.1
2,632,240 + EX28DRAFT_2598 0.40 -1.6
2,632,241 - EX28DRAFT_2598 0.40 -0.0
2,632,241 - EX28DRAFT_2598 0.40 -0.1
2,632,241 - EX28DRAFT_2598 0.40 -0.2
2,632,276 - EX28DRAFT_2598 0.43 +0.1
2,632,324 - EX28DRAFT_2598 0.47 -0.6
2,632,383 + EX28DRAFT_2598 0.52 +0.2
2,632,436 + EX28DRAFT_2598 0.57 +0.2
2,632,503 - EX28DRAFT_2598 0.63 -0.1
2,632,506 - EX28DRAFT_2598 0.63 +0.1

Or see this region's nucleotide sequence