Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2453

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2452 and EX28DRAFT_2453 are separated by 74 nucleotidesEX28DRAFT_2453 and EX28DRAFT_2454 are separated by 92 nucleotides EX28DRAFT_2452: EX28DRAFT_2452 - transcriptional regulator, LacI family, at 2,482,876 to 2,483,892 _2452 EX28DRAFT_2453: EX28DRAFT_2453 - Predicted membrane-bound metal-dependent hydrolases, at 2,483,967 to 2,484,488 _2453 EX28DRAFT_2454: EX28DRAFT_2454 - cysteinyl-tRNA synthetase (EC 6.1.1.16), at 2,484,581 to 2,485,966 _2454 Position (kb) 2483 2484 2485Strain fitness (log2 ratio) -1 0 1at 2483.014 kb on + strand, within EX28DRAFT_2452at 2483.022 kb on + strand, within EX28DRAFT_2452at 2483.149 kb on + strand, within EX28DRAFT_2452at 2483.151 kb on + strand, within EX28DRAFT_2452at 2483.152 kb on - strand, within EX28DRAFT_2452at 2483.214 kb on + strand, within EX28DRAFT_2452at 2483.243 kb on - strand, within EX28DRAFT_2452at 2483.392 kb on + strand, within EX28DRAFT_2452at 2483.426 kb on - strand, within EX28DRAFT_2452at 2483.521 kb on + strand, within EX28DRAFT_2452at 2483.724 kb on + strand, within EX28DRAFT_2452at 2483.725 kb on - strand, within EX28DRAFT_2452at 2483.725 kb on - strand, within EX28DRAFT_2452at 2483.761 kb on + strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.762 kb on - strand, within EX28DRAFT_2452at 2483.937 kb on + strandat 2483.981 kb on + strandat 2484.014 kb on - strandat 2484.172 kb on + strand, within EX28DRAFT_2453at 2484.172 kb on + strand, within EX28DRAFT_2453at 2484.360 kb on - strand, within EX28DRAFT_2453at 2484.388 kb on - strand, within EX28DRAFT_2453at 2484.487 kb on - strandat 2484.582 kb on + strandat 2484.583 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
2,483,014 + EX28DRAFT_2452 0.14 +0.9
2,483,022 + EX28DRAFT_2452 0.14 +0.0
2,483,149 + EX28DRAFT_2452 0.27 -0.2
2,483,151 + EX28DRAFT_2452 0.27 -1.5
2,483,152 - EX28DRAFT_2452 0.27 +0.0
2,483,214 + EX28DRAFT_2452 0.33 +0.0
2,483,243 - EX28DRAFT_2452 0.36 -0.4
2,483,392 + EX28DRAFT_2452 0.51 -0.1
2,483,426 - EX28DRAFT_2452 0.54 -0.3
2,483,521 + EX28DRAFT_2452 0.63 +0.7
2,483,724 + EX28DRAFT_2452 0.83 +0.9
2,483,725 - EX28DRAFT_2452 0.83 +0.9
2,483,725 - EX28DRAFT_2452 0.83 +0.1
2,483,761 + EX28DRAFT_2452 0.87 +0.1
2,483,762 - EX28DRAFT_2452 0.87 -0.2
2,483,762 - EX28DRAFT_2452 0.87 +0.3
2,483,762 - EX28DRAFT_2452 0.87 +0.5
2,483,762 - EX28DRAFT_2452 0.87 -0.3
2,483,937 + +0.3
2,483,981 + +0.1
2,484,014 - -0.1
2,484,172 + EX28DRAFT_2453 0.39 +0.9
2,484,172 + EX28DRAFT_2453 0.39 +0.0
2,484,360 - EX28DRAFT_2453 0.75 -0.2
2,484,388 - EX28DRAFT_2453 0.81 +0.3
2,484,487 - -0.2
2,484,582 + -0.1
2,484,583 - -0.2

Or see this region's nucleotide sequence