Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2392 and EX28DRAFT_2393 are separated by 33 nucleotides EX28DRAFT_2393 and EX28DRAFT_2394 are separated by 33 nucleotides EX28DRAFT_2394 and EX28DRAFT_2395 are separated by 201 nucleotides
EX28DRAFT_2392: EX28DRAFT_2392 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,417,487 to 2,418,227
_2392
EX28DRAFT_2393: EX28DRAFT_2393 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 2,418,261 to 2,419,955
_2393
EX28DRAFT_2394: EX28DRAFT_2394 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,419,989 to 2,420,687
_2394
EX28DRAFT_2395: EX28DRAFT_2395 - ABC-type dipeptide transport system, periplasmic component, at 2,420,889 to 2,422,457
_2395
Position (kb)
2418
2419
2420 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2417.261 kb on - strand at 2417.267 kb on + strand at 2417.517 kb on - strand at 2417.571 kb on - strand, within EX28DRAFT_2392 at 2417.636 kb on + strand, within EX28DRAFT_2392 at 2417.900 kb on + strand, within EX28DRAFT_2392 at 2417.952 kb on + strand, within EX28DRAFT_2392 at 2417.996 kb on - strand, within EX28DRAFT_2392 at 2418.032 kb on + strand, within EX28DRAFT_2392 at 2418.032 kb on + strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.155 kb on - strand at 2418.155 kb on - strand at 2418.196 kb on + strand at 2418.196 kb on + strand at 2418.236 kb on - strand at 2418.423 kb on + strand at 2418.423 kb on + strand at 2418.424 kb on - strand at 2418.501 kb on - strand, within EX28DRAFT_2393 at 2418.551 kb on + strand, within EX28DRAFT_2393 at 2418.612 kb on + strand, within EX28DRAFT_2393 at 2418.766 kb on + strand, within EX28DRAFT_2393 at 2418.834 kb on + strand, within EX28DRAFT_2393 at 2418.835 kb on - strand, within EX28DRAFT_2393 at 2419.049 kb on + strand, within EX28DRAFT_2393 at 2419.092 kb on + strand, within EX28DRAFT_2393 at 2419.093 kb on - strand, within EX28DRAFT_2393 at 2419.106 kb on + strand, within EX28DRAFT_2393 at 2419.131 kb on - strand, within EX28DRAFT_2393 at 2419.140 kb on + strand, within EX28DRAFT_2393 at 2419.140 kb on + strand, within EX28DRAFT_2393 at 2419.140 kb on + strand, within EX28DRAFT_2393 at 2419.179 kb on + strand, within EX28DRAFT_2393 at 2419.218 kb on + strand, within EX28DRAFT_2393 at 2419.249 kb on + strand, within EX28DRAFT_2393 at 2419.249 kb on + strand, within EX28DRAFT_2393 at 2419.250 kb on - strand, within EX28DRAFT_2393 at 2419.250 kb on - strand, within EX28DRAFT_2393 at 2419.536 kb on + strand, within EX28DRAFT_2393 at 2419.537 kb on - strand, within EX28DRAFT_2393 at 2419.722 kb on + strand, within EX28DRAFT_2393 at 2419.723 kb on - strand, within EX28DRAFT_2393 at 2419.723 kb on - strand, within EX28DRAFT_2393 at 2419.972 kb on + strand at 2419.972 kb on + strand at 2419.978 kb on - strand at 2419.981 kb on + strand at 2419.981 kb on + strand at 2419.982 kb on - strand at 2419.982 kb on - strand at 2419.982 kb on - strand at 2419.982 kb on - strand at 2419.990 kb on + strand at 2419.990 kb on + strand at 2419.991 kb on - strand at 2419.991 kb on - strand at 2419.993 kb on - strand at 2420.015 kb on + strand at 2420.103 kb on - strand, within EX28DRAFT_2394 at 2420.103 kb on - strand, within EX28DRAFT_2394 at 2420.272 kb on - strand, within EX28DRAFT_2394 at 2420.371 kb on + strand, within EX28DRAFT_2394 at 2420.371 kb on + strand, within EX28DRAFT_2394 at 2420.371 kb on + strand, within EX28DRAFT_2394 at 2420.372 kb on - strand, within EX28DRAFT_2394 at 2420.372 kb on - strand, within EX28DRAFT_2394 at 2420.372 kb on - strand, within EX28DRAFT_2394 at 2420.372 kb on - strand, within EX28DRAFT_2394 at 2420.372 kb on - strand, within EX28DRAFT_2394 at 2420.543 kb on - strand, within EX28DRAFT_2394 at 2420.617 kb on - strand, within EX28DRAFT_2394 at 2420.620 kb on - strand at 2420.723 kb on - strand at 2420.731 kb on - strand at 2420.758 kb on + strand at 2420.792 kb on + strand at 2420.792 kb on + strand at 2420.794 kb on + strand at 2420.794 kb on + strand at 2420.795 kb on - strand at 2420.827 kb on - strand at 2420.853 kb on + strand at 2420.867 kb on + strand at 2420.867 kb on + strand at 2420.868 kb on - strand at 2420.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,417,261 - -0.3 2,417,267 + -0.1 2,417,517 - -0.1 2,417,571 - EX28DRAFT_2392 0.11 -0.1 2,417,636 + EX28DRAFT_2392 0.20 +0.2 2,417,900 + EX28DRAFT_2392 0.56 -0.3 2,417,952 + EX28DRAFT_2392 0.63 +0.6 2,417,996 - EX28DRAFT_2392 0.69 -0.0 2,418,032 + EX28DRAFT_2392 0.74 +0.5 2,418,032 + EX28DRAFT_2392 0.74 -0.2 2,418,033 - EX28DRAFT_2392 0.74 +0.7 2,418,033 - EX28DRAFT_2392 0.74 +0.6 2,418,033 - EX28DRAFT_2392 0.74 +0.3 2,418,155 - +0.6 2,418,155 - +0.1 2,418,196 + -0.1 2,418,196 + +0.5 2,418,236 - -0.4 2,418,423 + -0.2 2,418,423 + -0.3 2,418,424 - -0.4 2,418,501 - EX28DRAFT_2393 0.14 -0.6 2,418,551 + EX28DRAFT_2393 0.17 -0.1 2,418,612 + EX28DRAFT_2393 0.21 +0.2 2,418,766 + EX28DRAFT_2393 0.30 +0.2 2,418,834 + EX28DRAFT_2393 0.34 +0.1 2,418,835 - EX28DRAFT_2393 0.34 +0.5 2,419,049 + EX28DRAFT_2393 0.46 -0.3 2,419,092 + EX28DRAFT_2393 0.49 +0.4 2,419,093 - EX28DRAFT_2393 0.49 +0.7 2,419,106 + EX28DRAFT_2393 0.50 -0.5 2,419,131 - EX28DRAFT_2393 0.51 -0.1 2,419,140 + EX28DRAFT_2393 0.52 +1.8 2,419,140 + EX28DRAFT_2393 0.52 +0.2 2,419,140 + EX28DRAFT_2393 0.52 +0.1 2,419,179 + EX28DRAFT_2393 0.54 +0.4 2,419,218 + EX28DRAFT_2393 0.56 +0.2 2,419,249 + EX28DRAFT_2393 0.58 +1.2 2,419,249 + EX28DRAFT_2393 0.58 +0.3 2,419,250 - EX28DRAFT_2393 0.58 +0.1 2,419,250 - EX28DRAFT_2393 0.58 +0.7 2,419,536 + EX28DRAFT_2393 0.75 +0.0 2,419,537 - EX28DRAFT_2393 0.75 +0.1 2,419,722 + EX28DRAFT_2393 0.86 -0.7 2,419,723 - EX28DRAFT_2393 0.86 +0.2 2,419,723 - EX28DRAFT_2393 0.86 +0.3 2,419,972 + +0.3 2,419,972 + -1.1 2,419,978 - +1.1 2,419,981 + -0.8 2,419,981 + -0.3 2,419,982 - -0.3 2,419,982 - +0.2 2,419,982 - +0.8 2,419,982 - -0.3 2,419,990 + -0.3 2,419,990 + -2.0 2,419,991 - -0.1 2,419,991 - +1.6 2,419,993 - -0.6 2,420,015 + +0.1 2,420,103 - EX28DRAFT_2394 0.16 +0.9 2,420,103 - EX28DRAFT_2394 0.16 +0.5 2,420,272 - EX28DRAFT_2394 0.40 -0.1 2,420,371 + EX28DRAFT_2394 0.55 +0.8 2,420,371 + EX28DRAFT_2394 0.55 -0.2 2,420,371 + EX28DRAFT_2394 0.55 +0.0 2,420,372 - EX28DRAFT_2394 0.55 +0.0 2,420,372 - EX28DRAFT_2394 0.55 +0.0 2,420,372 - EX28DRAFT_2394 0.55 +0.1 2,420,372 - EX28DRAFT_2394 0.55 -0.3 2,420,372 - EX28DRAFT_2394 0.55 +0.0 2,420,543 - EX28DRAFT_2394 0.79 +0.6 2,420,617 - EX28DRAFT_2394 0.90 +0.2 2,420,620 - -0.9 2,420,723 - +0.4 2,420,731 - +0.7 2,420,758 + -0.3 2,420,792 + +0.6 2,420,792 + +0.4 2,420,794 + +0.0 2,420,794 + +0.3 2,420,795 - -0.9 2,420,827 - +0.0 2,420,853 + +0.1 2,420,867 + -0.1 2,420,867 + -1.1 2,420,868 - -0.3 2,420,870 - -0.1
Or see this region's nucleotide sequence