Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2393

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2392 and EX28DRAFT_2393 are separated by 33 nucleotidesEX28DRAFT_2393 and EX28DRAFT_2394 are separated by 33 nucleotidesEX28DRAFT_2394 and EX28DRAFT_2395 are separated by 201 nucleotides EX28DRAFT_2392: EX28DRAFT_2392 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,417,487 to 2,418,227 _2392 EX28DRAFT_2393: EX28DRAFT_2393 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 2,418,261 to 2,419,955 _2393 EX28DRAFT_2394: EX28DRAFT_2394 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,419,989 to 2,420,687 _2394 EX28DRAFT_2395: EX28DRAFT_2395 - ABC-type dipeptide transport system, periplasmic component, at 2,420,889 to 2,422,457 _2395 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -2 -1 0 1 2at 2417.261 kb on - strandat 2417.267 kb on + strandat 2417.517 kb on - strandat 2417.571 kb on - strand, within EX28DRAFT_2392at 2417.636 kb on + strand, within EX28DRAFT_2392at 2417.900 kb on + strand, within EX28DRAFT_2392at 2417.952 kb on + strand, within EX28DRAFT_2392at 2417.996 kb on - strand, within EX28DRAFT_2392at 2418.032 kb on + strand, within EX28DRAFT_2392at 2418.032 kb on + strand, within EX28DRAFT_2392at 2418.033 kb on - strand, within EX28DRAFT_2392at 2418.033 kb on - strand, within EX28DRAFT_2392at 2418.033 kb on - strand, within EX28DRAFT_2392at 2418.155 kb on - strandat 2418.155 kb on - strandat 2418.196 kb on + strandat 2418.196 kb on + strandat 2418.236 kb on - strandat 2418.423 kb on + strandat 2418.423 kb on + strandat 2418.424 kb on - strandat 2418.501 kb on - strand, within EX28DRAFT_2393at 2418.551 kb on + strand, within EX28DRAFT_2393at 2418.612 kb on + strand, within EX28DRAFT_2393at 2418.766 kb on + strand, within EX28DRAFT_2393at 2418.834 kb on + strand, within EX28DRAFT_2393at 2418.835 kb on - strand, within EX28DRAFT_2393at 2419.049 kb on + strand, within EX28DRAFT_2393at 2419.092 kb on + strand, within EX28DRAFT_2393at 2419.093 kb on - strand, within EX28DRAFT_2393at 2419.106 kb on + strand, within EX28DRAFT_2393at 2419.131 kb on - strand, within EX28DRAFT_2393at 2419.140 kb on + strand, within EX28DRAFT_2393at 2419.140 kb on + strand, within EX28DRAFT_2393at 2419.140 kb on + strand, within EX28DRAFT_2393at 2419.179 kb on + strand, within EX28DRAFT_2393at 2419.218 kb on + strand, within EX28DRAFT_2393at 2419.249 kb on + strand, within EX28DRAFT_2393at 2419.249 kb on + strand, within EX28DRAFT_2393at 2419.250 kb on - strand, within EX28DRAFT_2393at 2419.250 kb on - strand, within EX28DRAFT_2393at 2419.536 kb on + strand, within EX28DRAFT_2393at 2419.537 kb on - strand, within EX28DRAFT_2393at 2419.722 kb on + strand, within EX28DRAFT_2393at 2419.723 kb on - strand, within EX28DRAFT_2393at 2419.723 kb on - strand, within EX28DRAFT_2393at 2419.972 kb on + strandat 2419.972 kb on + strandat 2419.978 kb on - strandat 2419.981 kb on + strandat 2419.981 kb on + strandat 2419.982 kb on - strandat 2419.982 kb on - strandat 2419.982 kb on - strandat 2419.982 kb on - strandat 2419.990 kb on + strandat 2419.990 kb on + strandat 2419.991 kb on - strandat 2419.991 kb on - strandat 2419.993 kb on - strandat 2420.015 kb on + strandat 2420.103 kb on - strand, within EX28DRAFT_2394at 2420.103 kb on - strand, within EX28DRAFT_2394at 2420.272 kb on - strand, within EX28DRAFT_2394at 2420.371 kb on + strand, within EX28DRAFT_2394at 2420.371 kb on + strand, within EX28DRAFT_2394at 2420.371 kb on + strand, within EX28DRAFT_2394at 2420.372 kb on - strand, within EX28DRAFT_2394at 2420.372 kb on - strand, within EX28DRAFT_2394at 2420.372 kb on - strand, within EX28DRAFT_2394at 2420.372 kb on - strand, within EX28DRAFT_2394at 2420.372 kb on - strand, within EX28DRAFT_2394at 2420.543 kb on - strand, within EX28DRAFT_2394at 2420.617 kb on - strand, within EX28DRAFT_2394at 2420.620 kb on - strandat 2420.723 kb on - strandat 2420.731 kb on - strandat 2420.758 kb on + strandat 2420.792 kb on + strandat 2420.792 kb on + strandat 2420.794 kb on + strandat 2420.794 kb on + strandat 2420.795 kb on - strandat 2420.827 kb on - strandat 2420.853 kb on + strandat 2420.867 kb on + strandat 2420.867 kb on + strandat 2420.868 kb on - strandat 2420.870 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
2,417,261 - -0.3
2,417,267 + -0.1
2,417,517 - -0.1
2,417,571 - EX28DRAFT_2392 0.11 -0.1
2,417,636 + EX28DRAFT_2392 0.20 +0.2
2,417,900 + EX28DRAFT_2392 0.56 -0.3
2,417,952 + EX28DRAFT_2392 0.63 +0.6
2,417,996 - EX28DRAFT_2392 0.69 -0.0
2,418,032 + EX28DRAFT_2392 0.74 +0.5
2,418,032 + EX28DRAFT_2392 0.74 -0.2
2,418,033 - EX28DRAFT_2392 0.74 +0.7
2,418,033 - EX28DRAFT_2392 0.74 +0.6
2,418,033 - EX28DRAFT_2392 0.74 +0.3
2,418,155 - +0.6
2,418,155 - +0.1
2,418,196 + -0.1
2,418,196 + +0.5
2,418,236 - -0.4
2,418,423 + -0.2
2,418,423 + -0.3
2,418,424 - -0.4
2,418,501 - EX28DRAFT_2393 0.14 -0.6
2,418,551 + EX28DRAFT_2393 0.17 -0.1
2,418,612 + EX28DRAFT_2393 0.21 +0.2
2,418,766 + EX28DRAFT_2393 0.30 +0.2
2,418,834 + EX28DRAFT_2393 0.34 +0.1
2,418,835 - EX28DRAFT_2393 0.34 +0.5
2,419,049 + EX28DRAFT_2393 0.46 -0.3
2,419,092 + EX28DRAFT_2393 0.49 +0.4
2,419,093 - EX28DRAFT_2393 0.49 +0.7
2,419,106 + EX28DRAFT_2393 0.50 -0.5
2,419,131 - EX28DRAFT_2393 0.51 -0.1
2,419,140 + EX28DRAFT_2393 0.52 +1.8
2,419,140 + EX28DRAFT_2393 0.52 +0.2
2,419,140 + EX28DRAFT_2393 0.52 +0.1
2,419,179 + EX28DRAFT_2393 0.54 +0.4
2,419,218 + EX28DRAFT_2393 0.56 +0.2
2,419,249 + EX28DRAFT_2393 0.58 +1.2
2,419,249 + EX28DRAFT_2393 0.58 +0.3
2,419,250 - EX28DRAFT_2393 0.58 +0.1
2,419,250 - EX28DRAFT_2393 0.58 +0.7
2,419,536 + EX28DRAFT_2393 0.75 +0.0
2,419,537 - EX28DRAFT_2393 0.75 +0.1
2,419,722 + EX28DRAFT_2393 0.86 -0.7
2,419,723 - EX28DRAFT_2393 0.86 +0.2
2,419,723 - EX28DRAFT_2393 0.86 +0.3
2,419,972 + +0.3
2,419,972 + -1.1
2,419,978 - +1.1
2,419,981 + -0.8
2,419,981 + -0.3
2,419,982 - -0.3
2,419,982 - +0.2
2,419,982 - +0.8
2,419,982 - -0.3
2,419,990 + -0.3
2,419,990 + -2.0
2,419,991 - -0.1
2,419,991 - +1.6
2,419,993 - -0.6
2,420,015 + +0.1
2,420,103 - EX28DRAFT_2394 0.16 +0.9
2,420,103 - EX28DRAFT_2394 0.16 +0.5
2,420,272 - EX28DRAFT_2394 0.40 -0.1
2,420,371 + EX28DRAFT_2394 0.55 +0.8
2,420,371 + EX28DRAFT_2394 0.55 -0.2
2,420,371 + EX28DRAFT_2394 0.55 +0.0
2,420,372 - EX28DRAFT_2394 0.55 +0.0
2,420,372 - EX28DRAFT_2394 0.55 +0.0
2,420,372 - EX28DRAFT_2394 0.55 +0.1
2,420,372 - EX28DRAFT_2394 0.55 -0.3
2,420,372 - EX28DRAFT_2394 0.55 +0.0
2,420,543 - EX28DRAFT_2394 0.79 +0.6
2,420,617 - EX28DRAFT_2394 0.90 +0.2
2,420,620 - -0.9
2,420,723 - +0.4
2,420,731 - +0.7
2,420,758 + -0.3
2,420,792 + +0.6
2,420,792 + +0.4
2,420,794 + +0.0
2,420,794 + +0.3
2,420,795 - -0.9
2,420,827 - +0.0
2,420,853 + +0.1
2,420,867 + -0.1
2,420,867 + -1.1
2,420,868 - -0.3
2,420,870 - -0.1

Or see this region's nucleotide sequence