Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2275

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2273 and EX28DRAFT_2274 are separated by 19 nucleotidesEX28DRAFT_2274 and EX28DRAFT_2275 overlap by 14 nucleotidesEX28DRAFT_2275 and EX28DRAFT_2276 overlap by 7 nucleotidesEX28DRAFT_2276 and EX28DRAFT_2277 are separated by 14 nucleotides EX28DRAFT_2273: EX28DRAFT_2273 - Formamidopyrimidine-DNA glycosylase, at 2,297,019 to 2,297,810 _2273 EX28DRAFT_2274: EX28DRAFT_2274 - Uncharacterized proteins, homologs of lactam utilization protein B, at 2,297,830 to 2,298,570 _2274 EX28DRAFT_2275: EX28DRAFT_2275 - biotin-dependent carboxylase uncharacterized domain, at 2,298,557 to 2,299,489 _2275 EX28DRAFT_2276: EX28DRAFT_2276 - sensor histidine kinase inhibitor, KipI family, at 2,299,483 to 2,300,139 _2276 EX28DRAFT_2277: EX28DRAFT_2277 - dinuclear metal center protein, YbgI/SA1388 family, at 2,300,154 to 2,300,897 _2277 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -2 -1 0 1 2at 2297.597 kb on - strand, within EX28DRAFT_2273at 2297.612 kb on + strand, within EX28DRAFT_2273at 2297.614 kb on + strand, within EX28DRAFT_2273at 2297.614 kb on + strand, within EX28DRAFT_2273at 2297.614 kb on + strand, within EX28DRAFT_2273at 2297.615 kb on - strand, within EX28DRAFT_2273at 2297.615 kb on - strand, within EX28DRAFT_2273at 2297.616 kb on + strand, within EX28DRAFT_2273at 2297.616 kb on + strand, within EX28DRAFT_2273at 2297.617 kb on - strand, within EX28DRAFT_2273at 2297.617 kb on - strand, within EX28DRAFT_2273at 2297.667 kb on + strand, within EX28DRAFT_2273at 2297.668 kb on - strand, within EX28DRAFT_2273at 2297.668 kb on - strand, within EX28DRAFT_2273at 2297.668 kb on - strand, within EX28DRAFT_2273at 2297.712 kb on + strand, within EX28DRAFT_2273at 2297.713 kb on - strand, within EX28DRAFT_2273at 2297.918 kb on - strand, within EX28DRAFT_2274at 2298.012 kb on + strand, within EX28DRAFT_2274at 2298.158 kb on - strand, within EX28DRAFT_2274at 2298.177 kb on + strand, within EX28DRAFT_2274at 2298.432 kb on + strand, within EX28DRAFT_2274at 2298.432 kb on + strand, within EX28DRAFT_2274at 2298.433 kb on - strand, within EX28DRAFT_2274at 2298.433 kb on - strand, within EX28DRAFT_2274at 2298.690 kb on + strand, within EX28DRAFT_2275at 2298.759 kb on - strand, within EX28DRAFT_2275at 2298.759 kb on - strand, within EX28DRAFT_2275at 2298.923 kb on - strand, within EX28DRAFT_2275at 2298.923 kb on - strand, within EX28DRAFT_2275at 2299.159 kb on + strand, within EX28DRAFT_2275at 2299.159 kb on + strand, within EX28DRAFT_2275at 2299.160 kb on - strand, within EX28DRAFT_2275at 2299.308 kb on - strand, within EX28DRAFT_2275at 2299.325 kb on - strand, within EX28DRAFT_2275at 2299.407 kb on + strandat 2299.407 kb on + strandat 2299.408 kb on - strandat 2299.408 kb on - strandat 2299.451 kb on + strandat 2299.462 kb on - strandat 2299.490 kb on - strandat 2299.541 kb on - strandat 2299.591 kb on - strand, within EX28DRAFT_2276at 2299.715 kb on - strand, within EX28DRAFT_2276at 2299.728 kb on - strand, within EX28DRAFT_2276at 2299.766 kb on + strand, within EX28DRAFT_2276at 2299.859 kb on + strand, within EX28DRAFT_2276at 2299.859 kb on + strand, within EX28DRAFT_2276at 2299.938 kb on + strand, within EX28DRAFT_2276at 2299.938 kb on + strand, within EX28DRAFT_2276at 2299.938 kb on + strand, within EX28DRAFT_2276at 2299.939 kb on - strand, within EX28DRAFT_2276at 2299.939 kb on - strand, within EX28DRAFT_2276at 2299.956 kb on + strand, within EX28DRAFT_2276at 2299.982 kb on - strand, within EX28DRAFT_2276at 2299.986 kb on + strand, within EX28DRAFT_2276at 2299.987 kb on - strand, within EX28DRAFT_2276at 2299.987 kb on - strand, within EX28DRAFT_2276at 2300.053 kb on - strand, within EX28DRAFT_2276at 2300.120 kb on + strandat 2300.141 kb on + strandat 2300.142 kb on - strandat 2300.142 kb on - strandat 2300.142 kb on - strandat 2300.145 kb on + strandat 2300.145 kb on + strandat 2300.145 kb on + strandat 2300.146 kb on - strandat 2300.384 kb on + strand, within EX28DRAFT_2277

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,297,597 - EX28DRAFT_2273 0.73 +0.9
2,297,612 + EX28DRAFT_2273 0.75 +0.2
2,297,614 + EX28DRAFT_2273 0.75 -1.0
2,297,614 + EX28DRAFT_2273 0.75 +0.1
2,297,614 + EX28DRAFT_2273 0.75 +0.0
2,297,615 - EX28DRAFT_2273 0.75 +0.3
2,297,615 - EX28DRAFT_2273 0.75 -0.1
2,297,616 + EX28DRAFT_2273 0.75 +0.2
2,297,616 + EX28DRAFT_2273 0.75 -0.7
2,297,617 - EX28DRAFT_2273 0.76 -0.7
2,297,617 - EX28DRAFT_2273 0.76 +0.7
2,297,667 + EX28DRAFT_2273 0.82 +0.6
2,297,668 - EX28DRAFT_2273 0.82 -0.3
2,297,668 - EX28DRAFT_2273 0.82 -0.6
2,297,668 - EX28DRAFT_2273 0.82 -0.1
2,297,712 + EX28DRAFT_2273 0.88 -0.8
2,297,713 - EX28DRAFT_2273 0.88 +2.2
2,297,918 - EX28DRAFT_2274 0.12 +0.3
2,298,012 + EX28DRAFT_2274 0.25 -0.8
2,298,158 - EX28DRAFT_2274 0.44 -0.8
2,298,177 + EX28DRAFT_2274 0.47 -1.3
2,298,432 + EX28DRAFT_2274 0.81 -0.6
2,298,432 + EX28DRAFT_2274 0.81 +1.9
2,298,433 - EX28DRAFT_2274 0.81 +0.5
2,298,433 - EX28DRAFT_2274 0.81 +0.4
2,298,690 + EX28DRAFT_2275 0.14 -0.2
2,298,759 - EX28DRAFT_2275 0.22 +0.1
2,298,759 - EX28DRAFT_2275 0.22 +0.3
2,298,923 - EX28DRAFT_2275 0.39 +0.4
2,298,923 - EX28DRAFT_2275 0.39 +0.6
2,299,159 + EX28DRAFT_2275 0.65 -1.0
2,299,159 + EX28DRAFT_2275 0.65 +0.8
2,299,160 - EX28DRAFT_2275 0.65 +0.2
2,299,308 - EX28DRAFT_2275 0.80 +0.1
2,299,325 - EX28DRAFT_2275 0.82 +0.9
2,299,407 + +0.1
2,299,407 + -0.1
2,299,408 - +0.1
2,299,408 - +0.5
2,299,451 + +1.3
2,299,462 - -0.6
2,299,490 - -0.3
2,299,541 - -0.2
2,299,591 - EX28DRAFT_2276 0.16 +0.1
2,299,715 - EX28DRAFT_2276 0.35 +0.2
2,299,728 - EX28DRAFT_2276 0.37 +0.1
2,299,766 + EX28DRAFT_2276 0.43 -0.3
2,299,859 + EX28DRAFT_2276 0.57 -0.1
2,299,859 + EX28DRAFT_2276 0.57 +0.2
2,299,938 + EX28DRAFT_2276 0.69 -0.5
2,299,938 + EX28DRAFT_2276 0.69 +0.3
2,299,938 + EX28DRAFT_2276 0.69 -2.6
2,299,939 - EX28DRAFT_2276 0.69 -0.3
2,299,939 - EX28DRAFT_2276 0.69 -0.1
2,299,956 + EX28DRAFT_2276 0.72 -0.1
2,299,982 - EX28DRAFT_2276 0.76 +0.6
2,299,986 + EX28DRAFT_2276 0.77 -0.0
2,299,987 - EX28DRAFT_2276 0.77 -0.2
2,299,987 - EX28DRAFT_2276 0.77 +0.5
2,300,053 - EX28DRAFT_2276 0.87 +0.2
2,300,120 + -0.1
2,300,141 + -0.5
2,300,142 - +0.3
2,300,142 - +1.4
2,300,142 - -0.0
2,300,145 + -0.2
2,300,145 + -0.2
2,300,145 + -0.7
2,300,146 - -0.7
2,300,384 + EX28DRAFT_2277 0.31 +0.5

Or see this region's nucleotide sequence