Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2244

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2243 and EX28DRAFT_2244 overlap by 4 nucleotidesEX28DRAFT_2244 and EX28DRAFT_2245 are separated by 22 nucleotides EX28DRAFT_2243: EX28DRAFT_2243 - cation diffusion facilitator family transporter, at 2,266,805 to 2,267,743 _2243 EX28DRAFT_2244: EX28DRAFT_2244 - nicotinamide mononucleotide transporter PnuC, at 2,267,740 to 2,268,459 _2244 EX28DRAFT_2245: EX28DRAFT_2245 - quinolinate synthetase (EC 2.5.1.72), at 2,268,482 to 2,269,525 _2245 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -2 -1 0 1at 2266.759 kb on - strandat 2266.762 kb on - strandat 2267.036 kb on - strand, within EX28DRAFT_2243at 2267.111 kb on - strand, within EX28DRAFT_2243at 2267.636 kb on + strand, within EX28DRAFT_2243at 2267.636 kb on + strand, within EX28DRAFT_2243at 2267.669 kb on + strandat 2267.670 kb on - strandat 2267.781 kb on + strandat 2267.828 kb on + strand, within EX28DRAFT_2244at 2267.918 kb on + strand, within EX28DRAFT_2244at 2267.919 kb on - strand, within EX28DRAFT_2244at 2268.081 kb on + strand, within EX28DRAFT_2244at 2268.081 kb on + strand, within EX28DRAFT_2244at 2268.082 kb on - strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.095 kb on - strand, within EX28DRAFT_2244at 2268.213 kb on - strand, within EX28DRAFT_2244at 2268.258 kb on - strand, within EX28DRAFT_2244at 2268.352 kb on - strand, within EX28DRAFT_2244at 2268.422 kb on - strandat 2268.422 kb on - strandat 2268.423 kb on + strandat 2268.423 kb on + strandat 2268.424 kb on - strandat 2268.424 kb on - strandat 2268.483 kb on + strandat 2268.483 kb on + strandat 2268.483 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.488 kb on - strandat 2268.492 kb on - strandat 2268.531 kb on - strandat 2268.724 kb on - strand, within EX28DRAFT_2245at 2268.787 kb on + strand, within EX28DRAFT_2245at 2268.975 kb on + strand, within EX28DRAFT_2245at 2268.976 kb on - strand, within EX28DRAFT_2245at 2268.976 kb on - strand, within EX28DRAFT_2245at 2268.976 kb on - strand, within EX28DRAFT_2245at 2269.006 kb on + strand, within EX28DRAFT_2245at 2269.007 kb on - strand, within EX28DRAFT_2245at 2269.199 kb on - strand, within EX28DRAFT_2245at 2269.256 kb on - strand, within EX28DRAFT_2245at 2269.333 kb on + strand, within EX28DRAFT_2245at 2269.380 kb on + strand, within EX28DRAFT_2245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
2,266,759 - +0.7
2,266,762 - +0.0
2,267,036 - EX28DRAFT_2243 0.25 -2.5
2,267,111 - EX28DRAFT_2243 0.33 +0.5
2,267,636 + EX28DRAFT_2243 0.88 +0.5
2,267,636 + EX28DRAFT_2243 0.88 +0.5
2,267,669 + -0.1
2,267,670 - +0.2
2,267,781 + +0.8
2,267,828 + EX28DRAFT_2244 0.12 -0.5
2,267,918 + EX28DRAFT_2244 0.25 -0.1
2,267,919 - EX28DRAFT_2244 0.25 +0.3
2,268,081 + EX28DRAFT_2244 0.47 -0.2
2,268,081 + EX28DRAFT_2244 0.47 -0.2
2,268,082 - EX28DRAFT_2244 0.47 -0.6
2,268,083 + EX28DRAFT_2244 0.48 -0.5
2,268,083 + EX28DRAFT_2244 0.48 +0.1
2,268,083 + EX28DRAFT_2244 0.48 +0.3
2,268,083 + EX28DRAFT_2244 0.48 -0.6
2,268,083 + EX28DRAFT_2244 0.48 -0.1
2,268,083 + EX28DRAFT_2244 0.48 +0.0
2,268,083 + EX28DRAFT_2244 0.48 -0.1
2,268,083 + EX28DRAFT_2244 0.48 +0.2
2,268,095 - EX28DRAFT_2244 0.49 +0.4
2,268,213 - EX28DRAFT_2244 0.66 -1.3
2,268,258 - EX28DRAFT_2244 0.72 -0.0
2,268,352 - EX28DRAFT_2244 0.85 -0.1
2,268,422 - -0.0
2,268,422 - -0.2
2,268,423 + +0.1
2,268,423 + +0.7
2,268,424 - -0.3
2,268,424 - +0.8
2,268,483 + +0.2
2,268,483 + +0.6
2,268,483 + -0.8
2,268,487 + +1.1
2,268,487 + +0.2
2,268,487 + +0.1
2,268,487 + -0.1
2,268,487 + -0.1
2,268,488 - -0.9
2,268,492 - -0.3
2,268,531 - -0.5
2,268,724 - EX28DRAFT_2245 0.23 -0.3
2,268,787 + EX28DRAFT_2245 0.29 -0.2
2,268,975 + EX28DRAFT_2245 0.47 -0.9
2,268,976 - EX28DRAFT_2245 0.47 +0.9
2,268,976 - EX28DRAFT_2245 0.47 +0.4
2,268,976 - EX28DRAFT_2245 0.47 -0.8
2,269,006 + EX28DRAFT_2245 0.50 +0.2
2,269,007 - EX28DRAFT_2245 0.50 +0.4
2,269,199 - EX28DRAFT_2245 0.69 -0.9
2,269,256 - EX28DRAFT_2245 0.74 -1.1
2,269,333 + EX28DRAFT_2245 0.82 +0.0
2,269,380 + EX28DRAFT_2245 0.86 -0.5

Or see this region's nucleotide sequence