Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2124 and EX28DRAFT_2125 are separated by 7 nucleotides EX28DRAFT_2125 and EX28DRAFT_2126 are separated by 67 nucleotides EX28DRAFT_2126 and EX28DRAFT_2127 are separated by 67 nucleotides
EX28DRAFT_2124: EX28DRAFT_2124 - PAP2 (acid phosphatase) superfamily protein, at 2,143,213 to 2,143,941
_2124
EX28DRAFT_2125: EX28DRAFT_2125 - Membrane-associated phospholipid phosphatase, at 2,143,949 to 2,144,557
_2125
EX28DRAFT_2126: EX28DRAFT_2126 - transcriptional regulator, DeoR family, at 2,144,625 to 2,145,383
_2126
EX28DRAFT_2127: EX28DRAFT_2127 - D-alanyl-D-alanine carboxypeptidase, at 2,145,451 to 2,146,656
_2127
Position (kb)
2144
2145
2146 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2143.642 kb on - strand, within EX28DRAFT_2124 at 2143.822 kb on + strand, within EX28DRAFT_2124 at 2143.907 kb on - strand at 2143.943 kb on - strand at 2143.948 kb on + strand at 2143.948 kb on + strand at 2143.948 kb on + strand at 2143.949 kb on - strand at 2143.949 kb on - strand at 2143.967 kb on + strand at 2143.967 kb on + strand at 2143.967 kb on + strand at 2143.979 kb on + strand at 2143.979 kb on + strand at 2144.175 kb on - strand, within EX28DRAFT_2125 at 2144.228 kb on + strand, within EX28DRAFT_2125 at 2144.229 kb on - strand, within EX28DRAFT_2125 at 2144.230 kb on + strand, within EX28DRAFT_2125 at 2144.231 kb on - strand, within EX28DRAFT_2125 at 2144.486 kb on + strand, within EX28DRAFT_2125 at 2144.624 kb on + strand at 2144.696 kb on + strand at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.789 kb on + strand, within EX28DRAFT_2126 at 2144.790 kb on - strand, within EX28DRAFT_2126 at 2144.790 kb on - strand, within EX28DRAFT_2126 at 2144.790 kb on - strand, within EX28DRAFT_2126 at 2145.179 kb on + strand, within EX28DRAFT_2126 at 2145.378 kb on + strand at 2145.379 kb on - strand at 2145.381 kb on + strand at 2145.381 kb on + strand at 2145.381 kb on + strand at 2145.382 kb on - strand at 2145.382 kb on - strand at 2145.452 kb on + strand at 2145.452 kb on + strand at 2145.452 kb on + strand at 2145.453 kb on - strand at 2145.544 kb on + strand at 2145.545 kb on - strand at 2145.545 kb on - strand at 2145.573 kb on + strand, within EX28DRAFT_2127 at 2145.574 kb on - strand, within EX28DRAFT_2127 at 2145.653 kb on + strand, within EX28DRAFT_2127 at 2145.653 kb on + strand, within EX28DRAFT_2127 at 2145.800 kb on + strand, within EX28DRAFT_2127 at 2145.922 kb on - strand, within EX28DRAFT_2127 at 2146.015 kb on - strand, within EX28DRAFT_2127 at 2146.267 kb on - strand, within EX28DRAFT_2127 at 2146.270 kb on + strand, within EX28DRAFT_2127
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,143,642 - EX28DRAFT_2124 0.59 -0.3 2,143,822 + EX28DRAFT_2124 0.84 -0.0 2,143,907 - -0.2 2,143,943 - +0.6 2,143,948 + -0.0 2,143,948 + -0.2 2,143,948 + +0.0 2,143,949 - -0.3 2,143,949 - -0.6 2,143,967 + +0.6 2,143,967 + +0.6 2,143,967 + +0.1 2,143,979 + +0.1 2,143,979 + +0.3 2,144,175 - EX28DRAFT_2125 0.37 +0.4 2,144,228 + EX28DRAFT_2125 0.46 +0.2 2,144,229 - EX28DRAFT_2125 0.46 -0.2 2,144,230 + EX28DRAFT_2125 0.46 -1.5 2,144,231 - EX28DRAFT_2125 0.46 -0.0 2,144,486 + EX28DRAFT_2125 0.88 -0.2 2,144,624 + -0.3 2,144,696 + -0.5 2,144,789 + EX28DRAFT_2126 0.22 -0.5 2,144,789 + EX28DRAFT_2126 0.22 -0.5 2,144,789 + EX28DRAFT_2126 0.22 -0.7 2,144,789 + EX28DRAFT_2126 0.22 -1.1 2,144,790 - EX28DRAFT_2126 0.22 -0.2 2,144,790 - EX28DRAFT_2126 0.22 +0.1 2,144,790 - EX28DRAFT_2126 0.22 -1.7 2,145,179 + EX28DRAFT_2126 0.73 -1.8 2,145,378 + +0.6 2,145,379 - -0.1 2,145,381 + +0.4 2,145,381 + +2.6 2,145,381 + -0.3 2,145,382 - +0.8 2,145,382 - -0.3 2,145,452 + -1.3 2,145,452 + +0.2 2,145,452 + +0.0 2,145,453 - -0.0 2,145,544 + +0.2 2,145,545 - -0.6 2,145,545 - +0.1 2,145,573 + EX28DRAFT_2127 0.10 -0.2 2,145,574 - EX28DRAFT_2127 0.10 -0.2 2,145,653 + EX28DRAFT_2127 0.17 +0.3 2,145,653 + EX28DRAFT_2127 0.17 +0.2 2,145,800 + EX28DRAFT_2127 0.29 +0.1 2,145,922 - EX28DRAFT_2127 0.39 +0.6 2,146,015 - EX28DRAFT_2127 0.47 -0.2 2,146,267 - EX28DRAFT_2127 0.68 +0.6 2,146,270 + EX28DRAFT_2127 0.68 +0.2
Or see this region's nucleotide sequence