Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2126

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2124 and EX28DRAFT_2125 are separated by 7 nucleotidesEX28DRAFT_2125 and EX28DRAFT_2126 are separated by 67 nucleotidesEX28DRAFT_2126 and EX28DRAFT_2127 are separated by 67 nucleotides EX28DRAFT_2124: EX28DRAFT_2124 - PAP2 (acid phosphatase) superfamily protein, at 2,143,213 to 2,143,941 _2124 EX28DRAFT_2125: EX28DRAFT_2125 - Membrane-associated phospholipid phosphatase, at 2,143,949 to 2,144,557 _2125 EX28DRAFT_2126: EX28DRAFT_2126 - transcriptional regulator, DeoR family, at 2,144,625 to 2,145,383 _2126 EX28DRAFT_2127: EX28DRAFT_2127 - D-alanyl-D-alanine carboxypeptidase, at 2,145,451 to 2,146,656 _2127 Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -2 -1 0 1 2at 2143.642 kb on - strand, within EX28DRAFT_2124at 2143.822 kb on + strand, within EX28DRAFT_2124at 2143.907 kb on - strandat 2143.943 kb on - strandat 2143.948 kb on + strandat 2143.948 kb on + strandat 2143.948 kb on + strandat 2143.949 kb on - strandat 2143.949 kb on - strandat 2143.967 kb on + strandat 2143.967 kb on + strandat 2143.967 kb on + strandat 2143.979 kb on + strandat 2143.979 kb on + strandat 2144.175 kb on - strand, within EX28DRAFT_2125at 2144.228 kb on + strand, within EX28DRAFT_2125at 2144.229 kb on - strand, within EX28DRAFT_2125at 2144.230 kb on + strand, within EX28DRAFT_2125at 2144.231 kb on - strand, within EX28DRAFT_2125at 2144.486 kb on + strand, within EX28DRAFT_2125at 2144.624 kb on + strandat 2144.696 kb on + strandat 2144.789 kb on + strand, within EX28DRAFT_2126at 2144.789 kb on + strand, within EX28DRAFT_2126at 2144.789 kb on + strand, within EX28DRAFT_2126at 2144.789 kb on + strand, within EX28DRAFT_2126at 2144.790 kb on - strand, within EX28DRAFT_2126at 2144.790 kb on - strand, within EX28DRAFT_2126at 2144.790 kb on - strand, within EX28DRAFT_2126at 2145.179 kb on + strand, within EX28DRAFT_2126at 2145.378 kb on + strandat 2145.379 kb on - strandat 2145.381 kb on + strandat 2145.381 kb on + strandat 2145.381 kb on + strandat 2145.382 kb on - strandat 2145.382 kb on - strandat 2145.452 kb on + strandat 2145.452 kb on + strandat 2145.452 kb on + strandat 2145.453 kb on - strandat 2145.544 kb on + strandat 2145.545 kb on - strandat 2145.545 kb on - strandat 2145.573 kb on + strand, within EX28DRAFT_2127at 2145.574 kb on - strand, within EX28DRAFT_2127at 2145.653 kb on + strand, within EX28DRAFT_2127at 2145.653 kb on + strand, within EX28DRAFT_2127at 2145.800 kb on + strand, within EX28DRAFT_2127at 2145.922 kb on - strand, within EX28DRAFT_2127at 2146.015 kb on - strand, within EX28DRAFT_2127at 2146.267 kb on - strand, within EX28DRAFT_2127at 2146.270 kb on + strand, within EX28DRAFT_2127

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,143,642 - EX28DRAFT_2124 0.59 -0.3
2,143,822 + EX28DRAFT_2124 0.84 -0.0
2,143,907 - -0.2
2,143,943 - +0.6
2,143,948 + -0.0
2,143,948 + -0.2
2,143,948 + +0.0
2,143,949 - -0.3
2,143,949 - -0.6
2,143,967 + +0.6
2,143,967 + +0.6
2,143,967 + +0.1
2,143,979 + +0.1
2,143,979 + +0.3
2,144,175 - EX28DRAFT_2125 0.37 +0.4
2,144,228 + EX28DRAFT_2125 0.46 +0.2
2,144,229 - EX28DRAFT_2125 0.46 -0.2
2,144,230 + EX28DRAFT_2125 0.46 -1.5
2,144,231 - EX28DRAFT_2125 0.46 -0.0
2,144,486 + EX28DRAFT_2125 0.88 -0.2
2,144,624 + -0.3
2,144,696 + -0.5
2,144,789 + EX28DRAFT_2126 0.22 -0.5
2,144,789 + EX28DRAFT_2126 0.22 -0.5
2,144,789 + EX28DRAFT_2126 0.22 -0.7
2,144,789 + EX28DRAFT_2126 0.22 -1.1
2,144,790 - EX28DRAFT_2126 0.22 -0.2
2,144,790 - EX28DRAFT_2126 0.22 +0.1
2,144,790 - EX28DRAFT_2126 0.22 -1.7
2,145,179 + EX28DRAFT_2126 0.73 -1.8
2,145,378 + +0.6
2,145,379 - -0.1
2,145,381 + +0.4
2,145,381 + +2.6
2,145,381 + -0.3
2,145,382 - +0.8
2,145,382 - -0.3
2,145,452 + -1.3
2,145,452 + +0.2
2,145,452 + +0.0
2,145,453 - -0.0
2,145,544 + +0.2
2,145,545 - -0.6
2,145,545 - +0.1
2,145,573 + EX28DRAFT_2127 0.10 -0.2
2,145,574 - EX28DRAFT_2127 0.10 -0.2
2,145,653 + EX28DRAFT_2127 0.17 +0.3
2,145,653 + EX28DRAFT_2127 0.17 +0.2
2,145,800 + EX28DRAFT_2127 0.29 +0.1
2,145,922 - EX28DRAFT_2127 0.39 +0.6
2,146,015 - EX28DRAFT_2127 0.47 -0.2
2,146,267 - EX28DRAFT_2127 0.68 +0.6
2,146,270 + EX28DRAFT_2127 0.68 +0.2

Or see this region's nucleotide sequence