Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2034

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2032 and EX28DRAFT_2033 are separated by 204 nucleotidesEX28DRAFT_2033 and EX28DRAFT_2034 are separated by 36 nucleotidesEX28DRAFT_2034 and EX28DRAFT_2035 are separated by 123 nucleotides EX28DRAFT_2032: EX28DRAFT_2032 - formate acetyltransferase 1, at 2,045,610 to 2,047,892 _2032 EX28DRAFT_2033: EX28DRAFT_2033 - pyruvate formate-lyase 1-activating enzyme, at 2,048,097 to 2,048,837 _2033 EX28DRAFT_2034: EX28DRAFT_2034 - hypothetical protein, at 2,048,874 to 2,049,395 _2034 EX28DRAFT_2035: EX28DRAFT_2035 - Arabinose efflux permease, at 2,049,519 to 2,050,667 _2035 Position (kb) 2048 2049 2050Strain fitness (log2 ratio) -1 0 1 2at 2047.890 kb on + strandat 2047.891 kb on - strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.997 kb on + strandat 2047.998 kb on - strandat 2047.998 kb on - strandat 2047.998 kb on - strandat 2047.998 kb on - strandat 2047.999 kb on + strandat 2047.999 kb on + strandat 2048.000 kb on - strandat 2048.004 kb on + strandat 2048.399 kb on + strand, within EX28DRAFT_2033at 2048.400 kb on - strand, within EX28DRAFT_2033at 2048.425 kb on + strand, within EX28DRAFT_2033at 2048.563 kb on - strand, within EX28DRAFT_2033at 2048.720 kb on + strand, within EX28DRAFT_2033at 2048.746 kb on - strand, within EX28DRAFT_2033at 2048.806 kb on + strandat 2048.806 kb on + strandat 2048.806 kb on + strandat 2048.807 kb on - strandat 2048.807 kb on - strandat 2048.815 kb on - strandat 2048.832 kb on + strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.836 kb on - strandat 2048.869 kb on - strandat 2048.869 kb on - strandat 2048.870 kb on + strandat 2048.875 kb on + strandat 2049.038 kb on + strand, within EX28DRAFT_2034at 2049.083 kb on - strand, within EX28DRAFT_2034at 2049.165 kb on - strand, within EX28DRAFT_2034at 2049.212 kb on + strand, within EX28DRAFT_2034at 2049.212 kb on + strand, within EX28DRAFT_2034at 2049.213 kb on - strand, within EX28DRAFT_2034at 2049.222 kb on - strand, within EX28DRAFT_2034at 2049.389 kb on + strandat 2049.390 kb on - strandat 2049.407 kb on + strandat 2049.408 kb on - strandat 2049.409 kb on + strandat 2049.410 kb on - strandat 2049.457 kb on + strandat 2049.458 kb on - strandat 2049.458 kb on - strandat 2049.458 kb on - strandat 2049.458 kb on - strandat 2049.461 kb on + strandat 2049.461 kb on + strandat 2049.470 kb on + strandat 2049.471 kb on - strandat 2049.512 kb on + strandat 2049.513 kb on - strandat 2049.570 kb on + strandat 2049.582 kb on - strandat 2049.589 kb on - strandat 2049.606 kb on - strandat 2049.613 kb on - strandat 2049.626 kb on - strandat 2049.626 kb on - strandat 2049.648 kb on - strand, within EX28DRAFT_2035at 2049.660 kb on + strand, within EX28DRAFT_2035at 2049.661 kb on - strand, within EX28DRAFT_2035at 2049.677 kb on + strand, within EX28DRAFT_2035at 2049.678 kb on - strand, within EX28DRAFT_2035at 2049.678 kb on - strand, within EX28DRAFT_2035at 2049.679 kb on + strand, within EX28DRAFT_2035at 2049.679 kb on + strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.992 kb on - strand, within EX28DRAFT_2035at 2050.009 kb on + strand, within EX28DRAFT_2035at 2050.009 kb on + strand, within EX28DRAFT_2035at 2050.023 kb on + strand, within EX28DRAFT_2035at 2050.024 kb on - strand, within EX28DRAFT_2035at 2050.038 kb on - strand, within EX28DRAFT_2035at 2050.249 kb on + strand, within EX28DRAFT_2035at 2050.249 kb on + strand, within EX28DRAFT_2035at 2050.250 kb on - strand, within EX28DRAFT_2035at 2050.253 kb on - strand, within EX28DRAFT_2035at 2050.262 kb on + strand, within EX28DRAFT_2035at 2050.263 kb on - strand, within EX28DRAFT_2035at 2050.265 kb on - strand, within EX28DRAFT_2035at 2050.265 kb on - strand, within EX28DRAFT_2035at 2050.350 kb on + strand, within EX28DRAFT_2035

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,047,890 + -0.5
2,047,891 - +0.8
2,047,997 + +0.7
2,047,997 + +0.2
2,047,997 + +0.2
2,047,997 + +0.6
2,047,997 + +0.3
2,047,998 - -0.1
2,047,998 - -0.3
2,047,998 - -0.1
2,047,998 - -0.0
2,047,999 + +0.2
2,047,999 + +0.8
2,048,000 - +0.1
2,048,004 + -0.1
2,048,399 + EX28DRAFT_2033 0.41 -0.8
2,048,400 - EX28DRAFT_2033 0.41 +2.6
2,048,425 + EX28DRAFT_2033 0.44 +0.5
2,048,563 - EX28DRAFT_2033 0.63 -0.1
2,048,720 + EX28DRAFT_2033 0.84 -0.4
2,048,746 - EX28DRAFT_2033 0.88 -0.5
2,048,806 + -0.4
2,048,806 + -0.4
2,048,806 + -0.4
2,048,807 - -1.1
2,048,807 - -0.5
2,048,815 - +0.7
2,048,832 + -0.4
2,048,833 - +0.2
2,048,833 - -1.4
2,048,833 - +0.0
2,048,833 - +1.0
2,048,833 - -0.0
2,048,836 - -0.0
2,048,869 - +0.5
2,048,869 - +0.6
2,048,870 + -0.2
2,048,875 + +0.0
2,049,038 + EX28DRAFT_2034 0.31 +0.0
2,049,083 - EX28DRAFT_2034 0.40 +0.2
2,049,165 - EX28DRAFT_2034 0.56 -0.0
2,049,212 + EX28DRAFT_2034 0.65 -0.1
2,049,212 + EX28DRAFT_2034 0.65 +1.0
2,049,213 - EX28DRAFT_2034 0.65 +1.4
2,049,222 - EX28DRAFT_2034 0.67 +0.4
2,049,389 + -0.3
2,049,390 - +0.2
2,049,407 + -0.1
2,049,408 - -0.5
2,049,409 + +0.0
2,049,410 - +0.2
2,049,457 + +0.2
2,049,458 - +0.4
2,049,458 - +0.1
2,049,458 - -0.1
2,049,458 - -0.0
2,049,461 + +1.1
2,049,461 + -0.8
2,049,470 + -0.4
2,049,471 - +0.1
2,049,512 + -0.2
2,049,513 - -0.3
2,049,570 + -0.1
2,049,582 - +0.4
2,049,589 - -1.4
2,049,606 - +0.0
2,049,613 - +0.1
2,049,626 - -0.3
2,049,626 - -0.2
2,049,648 - EX28DRAFT_2035 0.11 -1.0
2,049,660 + EX28DRAFT_2035 0.12 -0.0
2,049,661 - EX28DRAFT_2035 0.12 -1.2
2,049,677 + EX28DRAFT_2035 0.14 -1.3
2,049,678 - EX28DRAFT_2035 0.14 -0.2
2,049,678 - EX28DRAFT_2035 0.14 -0.6
2,049,679 + EX28DRAFT_2035 0.14 +0.4
2,049,679 + EX28DRAFT_2035 0.14 -0.5
2,049,680 - EX28DRAFT_2035 0.14 -0.0
2,049,680 - EX28DRAFT_2035 0.14 +0.5
2,049,680 - EX28DRAFT_2035 0.14 +0.8
2,049,680 - EX28DRAFT_2035 0.14 -0.6
2,049,992 - EX28DRAFT_2035 0.41 +0.1
2,050,009 + EX28DRAFT_2035 0.43 -1.0
2,050,009 + EX28DRAFT_2035 0.43 +0.6
2,050,023 + EX28DRAFT_2035 0.44 +0.2
2,050,024 - EX28DRAFT_2035 0.44 +0.3
2,050,038 - EX28DRAFT_2035 0.45 +0.3
2,050,249 + EX28DRAFT_2035 0.64 +0.1
2,050,249 + EX28DRAFT_2035 0.64 -0.6
2,050,250 - EX28DRAFT_2035 0.64 +0.1
2,050,253 - EX28DRAFT_2035 0.64 +1.3
2,050,262 + EX28DRAFT_2035 0.65 -0.2
2,050,263 - EX28DRAFT_2035 0.65 +0.7
2,050,265 - EX28DRAFT_2035 0.65 -0.7
2,050,265 - EX28DRAFT_2035 0.65 -0.4
2,050,350 + EX28DRAFT_2035 0.72 -0.0

Or see this region's nucleotide sequence