Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2032 and EX28DRAFT_2033 are separated by 204 nucleotides EX28DRAFT_2033 and EX28DRAFT_2034 are separated by 36 nucleotides EX28DRAFT_2034 and EX28DRAFT_2035 are separated by 123 nucleotides
EX28DRAFT_2032: EX28DRAFT_2032 - formate acetyltransferase 1, at 2,045,610 to 2,047,892
_2032
EX28DRAFT_2033: EX28DRAFT_2033 - pyruvate formate-lyase 1-activating enzyme, at 2,048,097 to 2,048,837
_2033
EX28DRAFT_2034: EX28DRAFT_2034 - hypothetical protein, at 2,048,874 to 2,049,395
_2034
EX28DRAFT_2035: EX28DRAFT_2035 - Arabinose efflux permease, at 2,049,519 to 2,050,667
_2035
Position (kb)
2048
2049
2050 Strain fitness (log2 ratio)
-1
0
1
2 at 2047.890 kb on + strand at 2047.891 kb on - strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.997 kb on + strand at 2047.998 kb on - strand at 2047.998 kb on - strand at 2047.998 kb on - strand at 2047.998 kb on - strand at 2047.999 kb on + strand at 2047.999 kb on + strand at 2048.000 kb on - strand at 2048.004 kb on + strand at 2048.399 kb on + strand, within EX28DRAFT_2033 at 2048.400 kb on - strand, within EX28DRAFT_2033 at 2048.425 kb on + strand, within EX28DRAFT_2033 at 2048.563 kb on - strand, within EX28DRAFT_2033 at 2048.720 kb on + strand, within EX28DRAFT_2033 at 2048.746 kb on - strand, within EX28DRAFT_2033 at 2048.806 kb on + strand at 2048.806 kb on + strand at 2048.806 kb on + strand at 2048.807 kb on - strand at 2048.807 kb on - strand at 2048.815 kb on - strand at 2048.832 kb on + strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.833 kb on - strand at 2048.836 kb on - strand at 2048.869 kb on - strand at 2048.869 kb on - strand at 2048.870 kb on + strand at 2048.875 kb on + strand at 2049.038 kb on + strand, within EX28DRAFT_2034 at 2049.083 kb on - strand, within EX28DRAFT_2034 at 2049.165 kb on - strand, within EX28DRAFT_2034 at 2049.212 kb on + strand, within EX28DRAFT_2034 at 2049.212 kb on + strand, within EX28DRAFT_2034 at 2049.213 kb on - strand, within EX28DRAFT_2034 at 2049.222 kb on - strand, within EX28DRAFT_2034 at 2049.389 kb on + strand at 2049.390 kb on - strand at 2049.407 kb on + strand at 2049.408 kb on - strand at 2049.409 kb on + strand at 2049.410 kb on - strand at 2049.457 kb on + strand at 2049.458 kb on - strand at 2049.458 kb on - strand at 2049.458 kb on - strand at 2049.458 kb on - strand at 2049.461 kb on + strand at 2049.461 kb on + strand at 2049.470 kb on + strand at 2049.471 kb on - strand at 2049.512 kb on + strand at 2049.513 kb on - strand at 2049.570 kb on + strand at 2049.582 kb on - strand at 2049.589 kb on - strand at 2049.606 kb on - strand at 2049.613 kb on - strand at 2049.626 kb on - strand at 2049.626 kb on - strand at 2049.648 kb on - strand, within EX28DRAFT_2035 at 2049.660 kb on + strand, within EX28DRAFT_2035 at 2049.661 kb on - strand, within EX28DRAFT_2035 at 2049.677 kb on + strand, within EX28DRAFT_2035 at 2049.678 kb on - strand, within EX28DRAFT_2035 at 2049.678 kb on - strand, within EX28DRAFT_2035 at 2049.679 kb on + strand, within EX28DRAFT_2035 at 2049.679 kb on + strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.680 kb on - strand, within EX28DRAFT_2035 at 2049.992 kb on - strand, within EX28DRAFT_2035 at 2050.009 kb on + strand, within EX28DRAFT_2035 at 2050.009 kb on + strand, within EX28DRAFT_2035 at 2050.023 kb on + strand, within EX28DRAFT_2035 at 2050.024 kb on - strand, within EX28DRAFT_2035 at 2050.038 kb on - strand, within EX28DRAFT_2035 at 2050.249 kb on + strand, within EX28DRAFT_2035 at 2050.249 kb on + strand, within EX28DRAFT_2035 at 2050.250 kb on - strand, within EX28DRAFT_2035 at 2050.253 kb on - strand, within EX28DRAFT_2035 at 2050.262 kb on + strand, within EX28DRAFT_2035 at 2050.263 kb on - strand, within EX28DRAFT_2035 at 2050.265 kb on - strand, within EX28DRAFT_2035 at 2050.265 kb on - strand, within EX28DRAFT_2035 at 2050.350 kb on + strand, within EX28DRAFT_2035
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,047,890 + -0.5 2,047,891 - +0.8 2,047,997 + +0.7 2,047,997 + +0.2 2,047,997 + +0.2 2,047,997 + +0.6 2,047,997 + +0.3 2,047,998 - -0.1 2,047,998 - -0.3 2,047,998 - -0.1 2,047,998 - -0.0 2,047,999 + +0.2 2,047,999 + +0.8 2,048,000 - +0.1 2,048,004 + -0.1 2,048,399 + EX28DRAFT_2033 0.41 -0.8 2,048,400 - EX28DRAFT_2033 0.41 +2.6 2,048,425 + EX28DRAFT_2033 0.44 +0.5 2,048,563 - EX28DRAFT_2033 0.63 -0.1 2,048,720 + EX28DRAFT_2033 0.84 -0.4 2,048,746 - EX28DRAFT_2033 0.88 -0.5 2,048,806 + -0.4 2,048,806 + -0.4 2,048,806 + -0.4 2,048,807 - -1.1 2,048,807 - -0.5 2,048,815 - +0.7 2,048,832 + -0.4 2,048,833 - +0.2 2,048,833 - -1.4 2,048,833 - +0.0 2,048,833 - +1.0 2,048,833 - -0.0 2,048,836 - -0.0 2,048,869 - +0.5 2,048,869 - +0.6 2,048,870 + -0.2 2,048,875 + +0.0 2,049,038 + EX28DRAFT_2034 0.31 +0.0 2,049,083 - EX28DRAFT_2034 0.40 +0.2 2,049,165 - EX28DRAFT_2034 0.56 -0.0 2,049,212 + EX28DRAFT_2034 0.65 -0.1 2,049,212 + EX28DRAFT_2034 0.65 +1.0 2,049,213 - EX28DRAFT_2034 0.65 +1.4 2,049,222 - EX28DRAFT_2034 0.67 +0.4 2,049,389 + -0.3 2,049,390 - +0.2 2,049,407 + -0.1 2,049,408 - -0.5 2,049,409 + +0.0 2,049,410 - +0.2 2,049,457 + +0.2 2,049,458 - +0.4 2,049,458 - +0.1 2,049,458 - -0.1 2,049,458 - -0.0 2,049,461 + +1.1 2,049,461 + -0.8 2,049,470 + -0.4 2,049,471 - +0.1 2,049,512 + -0.2 2,049,513 - -0.3 2,049,570 + -0.1 2,049,582 - +0.4 2,049,589 - -1.4 2,049,606 - +0.0 2,049,613 - +0.1 2,049,626 - -0.3 2,049,626 - -0.2 2,049,648 - EX28DRAFT_2035 0.11 -1.0 2,049,660 + EX28DRAFT_2035 0.12 -0.0 2,049,661 - EX28DRAFT_2035 0.12 -1.2 2,049,677 + EX28DRAFT_2035 0.14 -1.3 2,049,678 - EX28DRAFT_2035 0.14 -0.2 2,049,678 - EX28DRAFT_2035 0.14 -0.6 2,049,679 + EX28DRAFT_2035 0.14 +0.4 2,049,679 + EX28DRAFT_2035 0.14 -0.5 2,049,680 - EX28DRAFT_2035 0.14 -0.0 2,049,680 - EX28DRAFT_2035 0.14 +0.5 2,049,680 - EX28DRAFT_2035 0.14 +0.8 2,049,680 - EX28DRAFT_2035 0.14 -0.6 2,049,992 - EX28DRAFT_2035 0.41 +0.1 2,050,009 + EX28DRAFT_2035 0.43 -1.0 2,050,009 + EX28DRAFT_2035 0.43 +0.6 2,050,023 + EX28DRAFT_2035 0.44 +0.2 2,050,024 - EX28DRAFT_2035 0.44 +0.3 2,050,038 - EX28DRAFT_2035 0.45 +0.3 2,050,249 + EX28DRAFT_2035 0.64 +0.1 2,050,249 + EX28DRAFT_2035 0.64 -0.6 2,050,250 - EX28DRAFT_2035 0.64 +0.1 2,050,253 - EX28DRAFT_2035 0.64 +1.3 2,050,262 + EX28DRAFT_2035 0.65 -0.2 2,050,263 - EX28DRAFT_2035 0.65 +0.7 2,050,265 - EX28DRAFT_2035 0.65 -0.7 2,050,265 - EX28DRAFT_2035 0.65 -0.4 2,050,350 + EX28DRAFT_2035 0.72 -0.0
Or see this region's nucleotide sequence