Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1943

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1942 and EX28DRAFT_1943 overlap by 4 nucleotidesEX28DRAFT_1943 and EX28DRAFT_1944 are separated by 69 nucleotides EX28DRAFT_1942: EX28DRAFT_1942 - amidohydrolase, AtzE family, at 1,947,545 to 1,948,942 _1942 EX28DRAFT_1943: EX28DRAFT_1943 - Protein of unknown function (DUF3225), at 1,948,939 to 1,949,325 _1943 EX28DRAFT_1944: EX28DRAFT_1944 - putative urate catabolism protein, at 1,949,395 to 1,950,327 _1944 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -1 0 1 2at 1948.465 kb on + strand, within EX28DRAFT_1942at 1948.587 kb on - strand, within EX28DRAFT_1942at 1948.587 kb on - strand, within EX28DRAFT_1942at 1948.780 kb on - strand, within EX28DRAFT_1942at 1949.000 kb on - strand, within EX28DRAFT_1943at 1949.396 kb on + strandat 1949.396 kb on + strandat 1949.397 kb on - strandat 1949.397 kb on - strandat 1949.478 kb on + strandat 1949.479 kb on - strandat 1949.479 kb on - strandat 1949.479 kb on - strandat 1949.480 kb on + strandat 1949.609 kb on + strand, within EX28DRAFT_1944at 1949.610 kb on - strand, within EX28DRAFT_1944at 1949.613 kb on + strand, within EX28DRAFT_1944at 1949.613 kb on + strand, within EX28DRAFT_1944at 1949.613 kb on + strand, within EX28DRAFT_1944at 1949.614 kb on - strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.615 kb on + strand, within EX28DRAFT_1944at 1949.616 kb on - strand, within EX28DRAFT_1944at 1949.616 kb on - strand, within EX28DRAFT_1944at 1949.616 kb on - strand, within EX28DRAFT_1944at 1949.759 kb on + strand, within EX28DRAFT_1944at 1949.832 kb on - strand, within EX28DRAFT_1944at 1949.925 kb on - strand, within EX28DRAFT_1944at 1950.215 kb on + strand, within EX28DRAFT_1944at 1950.215 kb on + strand, within EX28DRAFT_1944

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,948,465 + EX28DRAFT_1942 0.66 +0.7
1,948,587 - EX28DRAFT_1942 0.75 +1.8
1,948,587 - EX28DRAFT_1942 0.75 -0.4
1,948,780 - EX28DRAFT_1942 0.88 -1.6
1,949,000 - EX28DRAFT_1943 0.16 -0.7
1,949,396 + -0.6
1,949,396 + +0.4
1,949,397 - +1.0
1,949,397 - -0.7
1,949,478 + +0.6
1,949,479 - +0.3
1,949,479 - +0.2
1,949,479 - +1.2
1,949,480 + +0.1
1,949,609 + EX28DRAFT_1944 0.23 -0.3
1,949,610 - EX28DRAFT_1944 0.23 -0.3
1,949,613 + EX28DRAFT_1944 0.23 -0.1
1,949,613 + EX28DRAFT_1944 0.23 +0.2
1,949,613 + EX28DRAFT_1944 0.23 +1.2
1,949,614 - EX28DRAFT_1944 0.23 +0.1
1,949,615 + EX28DRAFT_1944 0.24 -0.0
1,949,615 + EX28DRAFT_1944 0.24 -0.0
1,949,615 + EX28DRAFT_1944 0.24 -0.0
1,949,615 + EX28DRAFT_1944 0.24 +0.2
1,949,616 - EX28DRAFT_1944 0.24 -0.0
1,949,616 - EX28DRAFT_1944 0.24 +0.3
1,949,616 - EX28DRAFT_1944 0.24 +0.6
1,949,759 + EX28DRAFT_1944 0.39 +0.1
1,949,832 - EX28DRAFT_1944 0.47 +0.2
1,949,925 - EX28DRAFT_1944 0.57 +0.2
1,950,215 + EX28DRAFT_1944 0.88 -0.7
1,950,215 + EX28DRAFT_1944 0.88 -0.0

Or see this region's nucleotide sequence