Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1862

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1860 and EX28DRAFT_1861 are separated by 93 nucleotidesEX28DRAFT_1861 and EX28DRAFT_1862 are separated by 4 nucleotidesEX28DRAFT_1862 and EX28DRAFT_1863 are separated by 58 nucleotides EX28DRAFT_1860: EX28DRAFT_1860 - flagella basal body P-ring formation protein FlgA, at 1,875,381 to 1,876,040 _1860 EX28DRAFT_1861: EX28DRAFT_1861 - anti-sigma-28 factor, FlgM family, at 1,876,134 to 1,876,427 _1861 EX28DRAFT_1862: EX28DRAFT_1862 - Flagellar biosynthesis/type III secretory pathway chaperone, at 1,876,432 to 1,876,857 _1862 EX28DRAFT_1863: EX28DRAFT_1863 - murein biosynthesis integral membrane protein MurJ, at 1,876,916 to 1,878,451 _1863 Position (kb) 1876 1877Strain fitness (log2 ratio) -1 0 1at 1875.497 kb on + strand, within EX28DRAFT_1860at 1875.636 kb on + strand, within EX28DRAFT_1860at 1875.640 kb on + strand, within EX28DRAFT_1860at 1875.641 kb on - strand, within EX28DRAFT_1860at 1875.641 kb on - strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.669 kb on + strand, within EX28DRAFT_1860at 1875.670 kb on - strand, within EX28DRAFT_1860at 1875.670 kb on - strand, within EX28DRAFT_1860at 1875.912 kb on - strand, within EX28DRAFT_1860at 1875.912 kb on - strand, within EX28DRAFT_1860at 1876.022 kb on + strandat 1876.023 kb on - strandat 1876.036 kb on + strandat 1876.036 kb on + strandat 1876.037 kb on - strandat 1876.037 kb on - strandat 1876.037 kb on - strandat 1876.037 kb on - strandat 1876.075 kb on + strandat 1876.133 kb on + strandat 1876.421 kb on + strandat 1876.425 kb on + strandat 1876.426 kb on - strandat 1876.431 kb on + strandat 1876.432 kb on - strandat 1876.452 kb on - strandat 1876.594 kb on + strand, within EX28DRAFT_1862at 1876.629 kb on + strand, within EX28DRAFT_1862at 1876.746 kb on + strand, within EX28DRAFT_1862at 1876.892 kb on + strandat 1876.893 kb on - strandat 1876.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,875,497 + EX28DRAFT_1860 0.18 -0.1
1,875,636 + EX28DRAFT_1860 0.39 +0.2
1,875,640 + EX28DRAFT_1860 0.39 +0.1
1,875,641 - EX28DRAFT_1860 0.39 -0.4
1,875,641 - EX28DRAFT_1860 0.39 +0.4
1,875,669 + EX28DRAFT_1860 0.44 +0.0
1,875,669 + EX28DRAFT_1860 0.44 +0.0
1,875,669 + EX28DRAFT_1860 0.44 -0.0
1,875,669 + EX28DRAFT_1860 0.44 +0.3
1,875,669 + EX28DRAFT_1860 0.44 +0.4
1,875,669 + EX28DRAFT_1860 0.44 -0.1
1,875,669 + EX28DRAFT_1860 0.44 -0.0
1,875,670 - EX28DRAFT_1860 0.44 -0.0
1,875,670 - EX28DRAFT_1860 0.44 -0.1
1,875,912 - EX28DRAFT_1860 0.80 -0.3
1,875,912 - EX28DRAFT_1860 0.80 +0.3
1,876,022 + +0.3
1,876,023 - -0.1
1,876,036 + +0.1
1,876,036 + +0.7
1,876,037 - -0.1
1,876,037 - -0.0
1,876,037 - +0.5
1,876,037 - -0.1
1,876,075 + +0.0
1,876,133 + +0.3
1,876,421 + +0.1
1,876,425 + -0.1
1,876,426 - -0.3
1,876,431 + -0.1
1,876,432 - +0.1
1,876,452 - -0.0
1,876,594 + EX28DRAFT_1862 0.38 +0.7
1,876,629 + EX28DRAFT_1862 0.46 +0.3
1,876,746 + EX28DRAFT_1862 0.74 +0.1
1,876,892 + -0.1
1,876,893 - -1.1
1,876,893 - -0.0

Or see this region's nucleotide sequence