Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1488

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1487 and EX28DRAFT_1488 are separated by 18 nucleotidesEX28DRAFT_1488 and EX28DRAFT_1489 are separated by 8 nucleotidesEX28DRAFT_1489 and EX28DRAFT_1490 overlap by 1 nucleotides EX28DRAFT_1487: EX28DRAFT_1487 - ABC-type proline/glycine betaine transport systems, permease component, at 1,501,519 to 1,502,229 _1487 EX28DRAFT_1488: EX28DRAFT_1488 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 1,502,248 to 1,503,147 _1488 EX28DRAFT_1489: EX28DRAFT_1489 - ABC-type proline/glycine betaine transport systems, permease component, at 1,503,156 to 1,503,803 _1489 EX28DRAFT_1490: EX28DRAFT_1490 - glycine betaine/L-proline transport ATP binding subunit, at 1,503,803 to 1,504,951 _1490 Position (kb) 1502 1503 1504Strain fitness (log2 ratio) -2 -1 0 1 2at 1501.310 kb on + strandat 1501.343 kb on + strandat 1501.443 kb on - strandat 1501.443 kb on - strandat 1501.490 kb on - strandat 1501.530 kb on - strandat 1501.564 kb on - strandat 1501.636 kb on + strand, within EX28DRAFT_1487at 1501.750 kb on + strand, within EX28DRAFT_1487at 1501.751 kb on - strand, within EX28DRAFT_1487at 1501.895 kb on - strand, within EX28DRAFT_1487at 1502.233 kb on + strandat 1502.247 kb on + strandat 1502.248 kb on - strandat 1502.483 kb on - strand, within EX28DRAFT_1488at 1502.613 kb on + strand, within EX28DRAFT_1488at 1502.613 kb on + strand, within EX28DRAFT_1488at 1502.613 kb on + strand, within EX28DRAFT_1488at 1502.613 kb on + strand, within EX28DRAFT_1488at 1502.614 kb on - strand, within EX28DRAFT_1488at 1502.659 kb on - strand, within EX28DRAFT_1488at 1502.703 kb on + strand, within EX28DRAFT_1488at 1502.845 kb on + strand, within EX28DRAFT_1488at 1502.846 kb on - strand, within EX28DRAFT_1488at 1502.848 kb on - strand, within EX28DRAFT_1488at 1502.887 kb on + strand, within EX28DRAFT_1488at 1503.171 kb on + strandat 1503.807 kb on + strandat 1503.807 kb on + strandat 1503.807 kb on + strandat 1504.052 kb on + strand, within EX28DRAFT_1490at 1504.052 kb on + strand, within EX28DRAFT_1490at 1504.135 kb on + strand, within EX28DRAFT_1490

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,501,310 + -1.2
1,501,343 + +0.4
1,501,443 - -0.1
1,501,443 - +0.5
1,501,490 - +0.8
1,501,530 - +0.0
1,501,564 - +0.1
1,501,636 + EX28DRAFT_1487 0.16 +0.0
1,501,750 + EX28DRAFT_1487 0.32 +0.0
1,501,751 - EX28DRAFT_1487 0.33 -0.1
1,501,895 - EX28DRAFT_1487 0.53 +0.6
1,502,233 + -0.7
1,502,247 + -0.3
1,502,248 - -0.3
1,502,483 - EX28DRAFT_1488 0.26 -0.0
1,502,613 + EX28DRAFT_1488 0.41 +0.6
1,502,613 + EX28DRAFT_1488 0.41 -0.1
1,502,613 + EX28DRAFT_1488 0.41 -1.8
1,502,613 + EX28DRAFT_1488 0.41 +0.3
1,502,614 - EX28DRAFT_1488 0.41 +0.2
1,502,659 - EX28DRAFT_1488 0.46 +0.2
1,502,703 + EX28DRAFT_1488 0.51 +2.0
1,502,845 + EX28DRAFT_1488 0.66 -0.1
1,502,846 - EX28DRAFT_1488 0.66 +1.7
1,502,848 - EX28DRAFT_1488 0.67 -0.2
1,502,887 + EX28DRAFT_1488 0.71 +0.1
1,503,171 + -0.4
1,503,807 + +0.1
1,503,807 + -0.9
1,503,807 + -0.3
1,504,052 + EX28DRAFT_1490 0.22 +0.0
1,504,052 + EX28DRAFT_1490 0.22 +0.1
1,504,135 + EX28DRAFT_1490 0.29 -0.0

Or see this region's nucleotide sequence