Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1418

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1416 and EX28DRAFT_1417 are separated by 7 nucleotidesEX28DRAFT_1417 and EX28DRAFT_1418 are separated by 11 nucleotidesEX28DRAFT_1418 and EX28DRAFT_1419 are separated by 8 nucleotidesEX28DRAFT_1419 and EX28DRAFT_1420 are separated by 11 nucleotides EX28DRAFT_1416: EX28DRAFT_1416 - phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 1,424,295 to 1,425,365 _1416 EX28DRAFT_1417: EX28DRAFT_1417 - phenylacetate-CoA oxygenase, PaaJ subunit, at 1,425,373 to 1,425,870 _1417 EX28DRAFT_1418: EX28DRAFT_1418 - phenylacetate-CoA oxygenase, PaaI subunit, at 1,425,882 to 1,426,628 _1418 EX28DRAFT_1419: EX28DRAFT_1419 - phenylacetate-CoA oxygenase, PaaH subunit, at 1,426,637 to 1,426,924 _1419 EX28DRAFT_1420: EX28DRAFT_1420 - phenylacetate-CoA oxygenase, PaaG subunit, at 1,426,936 to 1,427,865 _1420 Position (kb) 1425 1426 1427Strain fitness (log2 ratio) -1 0 1at 1425.023 kb on - strand, within EX28DRAFT_1416at 1425.078 kb on + strand, within EX28DRAFT_1416at 1425.079 kb on - strand, within EX28DRAFT_1416at 1425.196 kb on + strand, within EX28DRAFT_1416at 1425.196 kb on + strand, within EX28DRAFT_1416at 1425.197 kb on - strand, within EX28DRAFT_1416at 1425.379 kb on - strandat 1425.390 kb on - strandat 1425.411 kb on + strandat 1425.411 kb on + strandat 1425.628 kb on + strand, within EX28DRAFT_1417at 1425.704 kb on + strand, within EX28DRAFT_1417at 1425.705 kb on - strand, within EX28DRAFT_1417at 1425.705 kb on - strand, within EX28DRAFT_1417at 1425.983 kb on - strand, within EX28DRAFT_1418at 1425.987 kb on + strand, within EX28DRAFT_1418at 1426.248 kb on - strand, within EX28DRAFT_1418at 1426.465 kb on + strand, within EX28DRAFT_1418at 1426.466 kb on - strand, within EX28DRAFT_1418at 1426.642 kb on + strandat 1426.642 kb on + strandat 1426.642 kb on + strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.771 kb on + strand, within EX28DRAFT_1419at 1426.771 kb on + strand, within EX28DRAFT_1419at 1426.772 kb on - strand, within EX28DRAFT_1419at 1426.886 kb on + strand, within EX28DRAFT_1419at 1427.572 kb on + strand, within EX28DRAFT_1420at 1427.586 kb on - strand, within EX28DRAFT_1420

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,425,023 - EX28DRAFT_1416 0.68 +1.4
1,425,078 + EX28DRAFT_1416 0.73 +0.1
1,425,079 - EX28DRAFT_1416 0.73 -0.4
1,425,196 + EX28DRAFT_1416 0.84 +0.5
1,425,196 + EX28DRAFT_1416 0.84 +1.7
1,425,197 - EX28DRAFT_1416 0.84 -0.1
1,425,379 - +0.2
1,425,390 - -0.1
1,425,411 + -1.1
1,425,411 + +0.5
1,425,628 + EX28DRAFT_1417 0.51 -0.2
1,425,704 + EX28DRAFT_1417 0.66 -0.1
1,425,705 - EX28DRAFT_1417 0.67 -1.2
1,425,705 - EX28DRAFT_1417 0.67 +1.1
1,425,983 - EX28DRAFT_1418 0.14 -0.4
1,425,987 + EX28DRAFT_1418 0.14 -0.3
1,426,248 - EX28DRAFT_1418 0.49 -0.2
1,426,465 + EX28DRAFT_1418 0.78 -0.2
1,426,466 - EX28DRAFT_1418 0.78 -1.4
1,426,642 + +0.0
1,426,642 + +0.8
1,426,642 + +0.2
1,426,643 - +0.7
1,426,643 - -1.3
1,426,643 - -0.1
1,426,643 - -0.2
1,426,771 + EX28DRAFT_1419 0.47 -0.2
1,426,771 + EX28DRAFT_1419 0.47 -0.0
1,426,772 - EX28DRAFT_1419 0.47 +0.1
1,426,886 + EX28DRAFT_1419 0.86 +0.5
1,427,572 + EX28DRAFT_1420 0.68 -0.7
1,427,586 - EX28DRAFT_1420 0.70 +0.2

Or see this region's nucleotide sequence