Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1153

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1152 and EX28DRAFT_1153 are separated by 141 nucleotidesEX28DRAFT_1153 and EX28DRAFT_1154 are separated by 77 nucleotidesEX28DRAFT_1154 and EX28DRAFT_1155 are separated by 132 nucleotides EX28DRAFT_1152: EX28DRAFT_1152 - Metallo-beta-lactamase superfamily, at 1,170,170 to 1,171,156 _1152 EX28DRAFT_1153: EX28DRAFT_1153 - 5'-nucleotidase, lipoprotein e(P4) family, at 1,171,298 to 1,172,056 _1153 EX28DRAFT_1154: EX28DRAFT_1154 - Acetyltransferases, at 1,172,134 to 1,172,661 _1154 EX28DRAFT_1155: EX28DRAFT_1155 - malto-oligosyltrehalose trehalohydrolase, at 1,172,794 to 1,174,581 _1155 Position (kb) 1171 1172 1173Strain fitness (log2 ratio) -2 -1 0 1at 1170.360 kb on + strand, within EX28DRAFT_1152at 1170.559 kb on - strand, within EX28DRAFT_1152at 1170.591 kb on + strand, within EX28DRAFT_1152at 1170.751 kb on + strand, within EX28DRAFT_1152at 1171.151 kb on - strandat 1171.156 kb on + strandat 1171.157 kb on - strandat 1171.184 kb on + strandat 1171.194 kb on + strandat 1171.592 kb on + strand, within EX28DRAFT_1153at 1171.616 kb on - strand, within EX28DRAFT_1153at 1171.644 kb on + strand, within EX28DRAFT_1153at 1171.644 kb on + strand, within EX28DRAFT_1153at 1171.645 kb on - strand, within EX28DRAFT_1153at 1171.750 kb on + strand, within EX28DRAFT_1153at 1171.750 kb on + strand, within EX28DRAFT_1153at 1171.750 kb on + strand, within EX28DRAFT_1153at 1171.751 kb on - strand, within EX28DRAFT_1153at 1172.022 kb on - strandat 1172.147 kb on + strandat 1172.147 kb on + strandat 1172.147 kb on + strandat 1172.148 kb on - strandat 1172.148 kb on - strandat 1172.148 kb on - strandat 1172.192 kb on + strand, within EX28DRAFT_1154at 1172.192 kb on + strand, within EX28DRAFT_1154at 1172.368 kb on + strand, within EX28DRAFT_1154at 1172.397 kb on + strand, within EX28DRAFT_1154at 1172.421 kb on + strand, within EX28DRAFT_1154at 1172.422 kb on - strand, within EX28DRAFT_1154at 1172.422 kb on - strand, within EX28DRAFT_1154at 1172.554 kb on + strand, within EX28DRAFT_1154at 1172.662 kb on - strandat 1172.662 kb on - strandat 1172.744 kb on + strandat 1172.744 kb on + strandat 1172.745 kb on - strandat 1172.752 kb on + strandat 1172.753 kb on - strandat 1172.766 kb on + strandat 1172.852 kb on + strandat 1172.853 kb on - strandat 1172.890 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,170,360 + EX28DRAFT_1152 0.19 -1.3
1,170,559 - EX28DRAFT_1152 0.39 +0.3
1,170,591 + EX28DRAFT_1152 0.43 +0.1
1,170,751 + EX28DRAFT_1152 0.59 +0.1
1,171,151 - +1.3
1,171,156 + -0.3
1,171,157 - -0.3
1,171,184 + +0.9
1,171,194 + +0.0
1,171,592 + EX28DRAFT_1153 0.39 +0.2
1,171,616 - EX28DRAFT_1153 0.42 -0.9
1,171,644 + EX28DRAFT_1153 0.46 +0.5
1,171,644 + EX28DRAFT_1153 0.46 -0.1
1,171,645 - EX28DRAFT_1153 0.46 +0.5
1,171,750 + EX28DRAFT_1153 0.60 +0.1
1,171,750 + EX28DRAFT_1153 0.60 +0.8
1,171,750 + EX28DRAFT_1153 0.60 +0.6
1,171,751 - EX28DRAFT_1153 0.60 +0.8
1,172,022 - -0.2
1,172,147 + +0.2
1,172,147 + -0.5
1,172,147 + -0.3
1,172,148 - +0.4
1,172,148 - +0.3
1,172,148 - +1.1
1,172,192 + EX28DRAFT_1154 0.11 -1.9
1,172,192 + EX28DRAFT_1154 0.11 -0.7
1,172,368 + EX28DRAFT_1154 0.44 -0.2
1,172,397 + EX28DRAFT_1154 0.50 +0.7
1,172,421 + EX28DRAFT_1154 0.54 +0.0
1,172,422 - EX28DRAFT_1154 0.55 -0.3
1,172,422 - EX28DRAFT_1154 0.55 -0.5
1,172,554 + EX28DRAFT_1154 0.80 -0.2
1,172,662 - +0.9
1,172,662 - +0.1
1,172,744 + -0.0
1,172,744 + -0.2
1,172,745 - -0.4
1,172,752 + +0.1
1,172,753 - +0.4
1,172,766 + -0.1
1,172,852 + -0.5
1,172,853 - +0.4
1,172,890 - -0.4

Or see this region's nucleotide sequence