Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1103 and EX28DRAFT_1104 are separated by 176 nucleotides EX28DRAFT_1104 and EX28DRAFT_1105 are separated by 95 nucleotides EX28DRAFT_1105 and EX28DRAFT_1106 are separated by 232 nucleotides EX28DRAFT_1106 and EX28DRAFT_1107 are separated by 110 nucleotides EX28DRAFT_1107 and EX28DRAFT_1108 are separated by 7 nucleotides
EX28DRAFT_1103: EX28DRAFT_1103 - Malic enzyme, at 1,116,823 to 1,118,520
_1103
EX28DRAFT_1104: EX28DRAFT_1104 - 30S ribosomal protein subunit S22 family, at 1,118,697 to 1,118,834
_1104
EX28DRAFT_1105: EX28DRAFT_1105 - Putative biofilm-dependent modulation protein, at 1,118,930 to 1,119,145
_1105
EX28DRAFT_1106: EX28DRAFT_1106 - Zn-dependent hydrolases, including glyoxylases, at 1,119,378 to 1,120,229
_1106
EX28DRAFT_1107: EX28DRAFT_1107 - Transcriptional regulator, at 1,120,340 to 1,121,215
_1107
EX28DRAFT_1108: EX28DRAFT_1108 - hypothetical protein, at 1,121,223 to 1,122,182
_1108
Position (kb)
1119
1120
1121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.487 kb on - strand at 1118.487 kb on - strand at 1118.487 kb on - strand at 1118.489 kb on - strand at 1118.606 kb on + strand at 1118.609 kb on + strand at 1118.610 kb on - strand at 1118.610 kb on - strand at 1118.610 kb on - strand at 1118.628 kb on - strand at 1118.643 kb on + strand at 1118.686 kb on + strand at 1118.699 kb on - strand at 1118.771 kb on + strand, within EX28DRAFT_1104 at 1118.796 kb on - strand, within EX28DRAFT_1104 at 1118.837 kb on + strand at 1118.838 kb on - strand at 1118.857 kb on + strand at 1118.895 kb on - strand at 1118.895 kb on - strand at 1118.902 kb on + strand at 1118.921 kb on - strand at 1118.962 kb on - strand, within EX28DRAFT_1105 at 1118.962 kb on - strand, within EX28DRAFT_1105 at 1118.965 kb on + strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.979 kb on + strand, within EX28DRAFT_1105 at 1118.979 kb on + strand, within EX28DRAFT_1105 at 1118.980 kb on - strand, within EX28DRAFT_1105 at 1119.121 kb on + strand, within EX28DRAFT_1105 at 1119.121 kb on + strand, within EX28DRAFT_1105 at 1119.122 kb on - strand, within EX28DRAFT_1105 at 1119.122 kb on - strand, within EX28DRAFT_1105 at 1119.140 kb on - strand at 1119.171 kb on - strand at 1119.414 kb on + strand at 1119.575 kb on - strand, within EX28DRAFT_1106 at 1119.748 kb on + strand, within EX28DRAFT_1106 at 1119.748 kb on + strand, within EX28DRAFT_1106 at 1119.749 kb on - strand, within EX28DRAFT_1106 at 1119.811 kb on - strand, within EX28DRAFT_1106 at 1119.896 kb on + strand, within EX28DRAFT_1106 at 1119.897 kb on - strand, within EX28DRAFT_1106 at 1119.970 kb on + strand, within EX28DRAFT_1106 at 1120.005 kb on - strand, within EX28DRAFT_1106 at 1120.149 kb on - strand at 1120.150 kb on + strand at 1120.150 kb on + strand at 1120.151 kb on - strand at 1120.151 kb on - strand at 1120.151 kb on - strand at 1120.192 kb on - strand at 1120.260 kb on + strand at 1120.337 kb on + strand at 1120.337 kb on + strand at 1120.338 kb on - strand at 1120.338 kb on - strand at 1120.339 kb on + strand at 1120.339 kb on + strand at 1120.339 kb on + strand at 1120.339 kb on + strand at 1120.339 kb on + strand at 1120.340 kb on - strand at 1120.340 kb on - strand at 1120.340 kb on - strand at 1120.637 kb on - strand, within EX28DRAFT_1107 at 1120.844 kb on + strand, within EX28DRAFT_1107 at 1121.027 kb on - strand, within EX28DRAFT_1107 at 1121.144 kb on + strand at 1121.159 kb on + strand at 1121.204 kb on + strand at 1121.213 kb on + strand at 1121.214 kb on - strand at 1121.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,118,486 + -0.1 1,118,486 + -0.4 1,118,486 + +0.4 1,118,486 + +0.1 1,118,486 + +0.4 1,118,487 - -2.7 1,118,487 - -0.0 1,118,487 - -0.1 1,118,489 - -0.0 1,118,606 + -0.1 1,118,609 + -0.5 1,118,610 - -0.8 1,118,610 - +2.5 1,118,610 - -0.9 1,118,628 - -0.1 1,118,643 + +0.5 1,118,686 + -1.0 1,118,699 - -2.1 1,118,771 + EX28DRAFT_1104 0.54 +2.5 1,118,796 - EX28DRAFT_1104 0.72 +0.6 1,118,837 + +0.4 1,118,838 - -0.4 1,118,857 + +0.3 1,118,895 - +0.5 1,118,895 - +0.2 1,118,902 + -0.3 1,118,921 - +0.0 1,118,962 - EX28DRAFT_1105 0.15 -0.7 1,118,962 - EX28DRAFT_1105 0.15 -0.1 1,118,965 + EX28DRAFT_1105 0.16 -2.5 1,118,966 - EX28DRAFT_1105 0.17 -0.3 1,118,966 - EX28DRAFT_1105 0.17 -0.1 1,118,966 - EX28DRAFT_1105 0.17 -0.2 1,118,966 - EX28DRAFT_1105 0.17 -0.1 1,118,966 - EX28DRAFT_1105 0.17 -0.1 1,118,979 + EX28DRAFT_1105 0.23 -0.0 1,118,979 + EX28DRAFT_1105 0.23 +0.4 1,118,980 - EX28DRAFT_1105 0.23 -0.2 1,119,121 + EX28DRAFT_1105 0.88 -1.5 1,119,121 + EX28DRAFT_1105 0.88 -0.1 1,119,122 - EX28DRAFT_1105 0.89 -0.5 1,119,122 - EX28DRAFT_1105 0.89 -0.3 1,119,140 - -0.0 1,119,171 - -0.3 1,119,414 + +0.2 1,119,575 - EX28DRAFT_1106 0.23 +0.2 1,119,748 + EX28DRAFT_1106 0.43 +0.4 1,119,748 + EX28DRAFT_1106 0.43 +0.9 1,119,749 - EX28DRAFT_1106 0.44 +1.4 1,119,811 - EX28DRAFT_1106 0.51 -0.3 1,119,896 + EX28DRAFT_1106 0.61 +0.4 1,119,897 - EX28DRAFT_1106 0.61 -0.7 1,119,970 + EX28DRAFT_1106 0.69 +1.1 1,120,005 - EX28DRAFT_1106 0.74 +0.0 1,120,149 - +0.3 1,120,150 + +0.4 1,120,150 + +0.0 1,120,151 - -0.1 1,120,151 - +0.1 1,120,151 - +0.2 1,120,192 - +0.2 1,120,260 + +0.3 1,120,337 + +0.2 1,120,337 + +0.3 1,120,338 - -0.2 1,120,338 - +0.3 1,120,339 + -0.9 1,120,339 + +0.4 1,120,339 + +0.0 1,120,339 + +0.7 1,120,339 + +0.2 1,120,340 - +0.3 1,120,340 - +0.9 1,120,340 - -0.6 1,120,637 - EX28DRAFT_1107 0.34 +0.1 1,120,844 + EX28DRAFT_1107 0.58 -0.2 1,121,027 - EX28DRAFT_1107 0.78 +0.7 1,121,144 + -0.3 1,121,159 + +0.1 1,121,204 + +0.3 1,121,213 + -0.2 1,121,214 - +0.0 1,121,214 - -0.3
Or see this region's nucleotide sequence