Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0467

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0467 and EX28DRAFT_0468 are separated by 372 nucleotides EX28DRAFT_0467: EX28DRAFT_0467 - hypothetical protein, at 450,649 to 451,281 _0467 EX28DRAFT_0468: EX28DRAFT_0468 - hydroxyethylthiazole kinase, at 451,654 to 452,424 _0468 Position (kb) 450 451 452Strain fitness (log2 ratio) -1 0 1 2at 449.687 kb on - strandat 449.728 kb on + strandat 449.846 kb on + strandat 449.859 kb on + strandat 449.860 kb on - strandat 449.861 kb on + strandat 449.862 kb on - strandat 449.862 kb on - strandat 449.862 kb on - strandat 449.862 kb on - strandat 449.862 kb on - strandat 449.862 kb on - strandat 449.865 kb on + strandat 449.865 kb on + strandat 449.866 kb on - strandat 449.866 kb on - strandat 449.866 kb on - strandat 449.868 kb on + strandat 449.869 kb on - strandat 449.869 kb on - strandat 449.869 kb on - strandat 449.903 kb on - strandat 449.909 kb on - strandat 449.921 kb on + strandat 449.922 kb on - strandat 449.922 kb on - strandat 449.922 kb on - strandat 449.924 kb on + strandat 449.926 kb on + strandat 449.926 kb on + strandat 449.927 kb on - strandat 449.927 kb on - strandat 449.927 kb on - strandat 449.927 kb on - strandat 449.927 kb on - strandat 449.927 kb on - strandat 450.012 kb on + strandat 450.029 kb on + strandat 450.030 kb on - strandat 450.030 kb on - strandat 450.030 kb on - strandat 450.039 kb on - strandat 450.047 kb on + strandat 450.048 kb on - strandat 450.131 kb on + strandat 450.135 kb on + strandat 450.140 kb on - strandat 450.143 kb on + strandat 450.186 kb on + strandat 450.186 kb on + strandat 450.257 kb on + strandat 450.257 kb on + strandat 450.258 kb on - strandat 450.324 kb on + strandat 450.329 kb on + strandat 450.329 kb on + strandat 450.352 kb on + strandat 450.353 kb on - strandat 450.354 kb on + strandat 450.385 kb on + strandat 450.385 kb on + strandat 450.385 kb on + strandat 450.386 kb on - strandat 450.430 kb on + strandat 450.486 kb on - strandat 450.526 kb on - strandat 450.526 kb on - strandat 450.542 kb on + strandat 450.543 kb on - strandat 450.543 kb on - strandat 450.559 kb on - strandat 450.584 kb on + strandat 450.584 kb on + strandat 450.584 kb on + strandat 450.584 kb on + strandat 450.585 kb on - strandat 450.618 kb on + strandat 450.618 kb on + strandat 450.618 kb on + strandat 450.618 kb on + strandat 450.618 kb on + strandat 450.619 kb on - strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.622 kb on + strandat 450.623 kb on - strandat 450.623 kb on - strandat 450.623 kb on - strandat 450.623 kb on - strandat 450.623 kb on - strandat 450.628 kb on + strandat 450.628 kb on + strandat 450.660 kb on + strandat 450.660 kb on + strandat 450.660 kb on + strandat 450.687 kb on + strandat 450.688 kb on - strandat 450.756 kb on + strand, within EX28DRAFT_0467at 450.757 kb on - strand, within EX28DRAFT_0467at 450.842 kb on - strand, within EX28DRAFT_0467at 450.846 kb on - strand, within EX28DRAFT_0467at 450.880 kb on + strand, within EX28DRAFT_0467at 450.880 kb on + strand, within EX28DRAFT_0467at 450.881 kb on - strand, within EX28DRAFT_0467at 450.885 kb on + strand, within EX28DRAFT_0467at 450.936 kb on + strand, within EX28DRAFT_0467at 450.936 kb on + strand, within EX28DRAFT_0467at 450.994 kb on - strand, within EX28DRAFT_0467at 451.074 kb on - strand, within EX28DRAFT_0467at 451.101 kb on + strand, within EX28DRAFT_0467at 451.102 kb on - strand, within EX28DRAFT_0467at 451.117 kb on - strand, within EX28DRAFT_0467at 451.141 kb on + strand, within EX28DRAFT_0467at 451.256 kb on - strandat 451.259 kb on + strandat 451.260 kb on - strandat 451.296 kb on + strandat 451.297 kb on - strandat 451.318 kb on + strandat 451.319 kb on - strandat 451.369 kb on - strandat 451.385 kb on + strandat 451.385 kb on + strandat 451.385 kb on + strandat 451.385 kb on + strandat 451.390 kb on + strandat 451.390 kb on + strandat 451.390 kb on + strandat 451.390 kb on + strandat 451.391 kb on - strandat 451.470 kb on - strandat 451.569 kb on + strandat 451.572 kb on + strandat 451.572 kb on + strandat 451.677 kb on - strandat 451.740 kb on - strand, within EX28DRAFT_0468at 451.857 kb on + strand, within EX28DRAFT_0468at 451.899 kb on - strand, within EX28DRAFT_0468

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
449,687 - -0.7
449,728 + +0.3
449,846 + +0.4
449,859 + +1.0
449,860 - -0.1
449,861 + +0.3
449,862 - -0.2
449,862 - +0.2
449,862 - -0.1
449,862 - -0.1
449,862 - +0.2
449,862 - -0.2
449,865 + -0.1
449,865 + -0.5
449,866 - -0.1
449,866 - +0.3
449,866 - -0.3
449,868 + -0.1
449,869 - +0.7
449,869 - +1.2
449,869 - -0.0
449,903 - -1.3
449,909 - +0.3
449,921 + +0.3
449,922 - +0.7
449,922 - +0.5
449,922 - -0.6
449,924 + +0.0
449,926 + +0.4
449,926 + +0.7
449,927 - -1.0
449,927 - +0.2
449,927 - +0.9
449,927 - -0.1
449,927 - +0.4
449,927 - +0.9
450,012 + -0.5
450,029 + +0.2
450,030 - +0.4
450,030 - -0.4
450,030 - -0.4
450,039 - -0.2
450,047 + +0.1
450,048 - -0.5
450,131 + -0.4
450,135 + -0.3
450,140 - -0.3
450,143 + +1.0
450,186 + +0.3
450,186 + +0.2
450,257 + +0.2
450,257 + +0.2
450,258 - +0.1
450,324 + +0.1
450,329 + +0.5
450,329 + -0.1
450,352 + +0.2
450,353 - -0.2
450,354 + -0.0
450,385 + +0.0
450,385 + -0.3
450,385 + -0.1
450,386 - -0.4
450,430 + -0.7
450,486 - -0.1
450,526 - -0.1
450,526 - +0.4
450,542 + +0.0
450,543 - -0.3
450,543 - -0.5
450,559 - -0.4
450,584 + -1.7
450,584 + +0.0
450,584 + -0.5
450,584 + -1.0
450,585 - -0.1
450,618 + +0.1
450,618 + +0.3
450,618 + +0.9
450,618 + +0.0
450,618 + +0.0
450,619 - +0.1
450,622 + +2.0
450,622 + +0.0
450,622 + +0.3
450,622 + +0.7
450,622 + -0.6
450,622 + -0.3
450,622 + +0.0
450,622 + -1.0
450,622 + -0.4
450,622 + +0.1
450,622 + +0.4
450,623 - +0.1
450,623 - +0.6
450,623 - -0.0
450,623 - -0.3
450,623 - -0.9
450,628 + -0.2
450,628 + +0.0
450,660 + -0.3
450,660 + -0.0
450,660 + -0.6
450,687 + -0.3
450,688 - +0.8
450,756 + EX28DRAFT_0467 0.17 +0.1
450,757 - EX28DRAFT_0467 0.17 +0.1
450,842 - EX28DRAFT_0467 0.30 -0.1
450,846 - EX28DRAFT_0467 0.31 +1.2
450,880 + EX28DRAFT_0467 0.36 -0.5
450,880 + EX28DRAFT_0467 0.36 +0.1
450,881 - EX28DRAFT_0467 0.37 -0.0
450,885 + EX28DRAFT_0467 0.37 +1.1
450,936 + EX28DRAFT_0467 0.45 -0.4
450,936 + EX28DRAFT_0467 0.45 +0.2
450,994 - EX28DRAFT_0467 0.55 -0.1
451,074 - EX28DRAFT_0467 0.67 +0.1
451,101 + EX28DRAFT_0467 0.71 -0.0
451,102 - EX28DRAFT_0467 0.72 -0.8
451,117 - EX28DRAFT_0467 0.74 -0.7
451,141 + EX28DRAFT_0467 0.78 -0.1
451,256 - -0.6
451,259 + +0.5
451,260 - -0.0
451,296 + +0.7
451,297 - -0.4
451,318 + -0.1
451,319 - -0.1
451,369 - +0.1
451,385 + -0.5
451,385 + +0.6
451,385 + +0.3
451,385 + +1.1
451,390 + +0.5
451,390 + -0.0
451,390 + +0.6
451,390 + -0.1
451,391 - +0.1
451,470 - +0.1
451,569 + -0.1
451,572 + +0.2
451,572 + -0.5
451,677 - -0.2
451,740 - EX28DRAFT_0468 0.11 -0.3
451,857 + EX28DRAFT_0468 0.26 +0.2
451,899 - EX28DRAFT_0468 0.32 +0.3

Or see this region's nucleotide sequence