Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04031 and ECD_04032 are separated by 94 nucleotides ECD_04032 and ECD_t00080 are separated by 210 nucleotides ECD_t00080 and ECD_t00081 are separated by 36 nucleotides ECD_t00081 and ECD_t00082 are separated by 35 nucleotides ECD_t00082 and ECD_04033 are separated by 269 nucleotides
ECD_04031: ECD_04031 - ribosome small subunit-dependent GTPase A, at 4,296,977 to 4,298,029
_04031
ECD_04032: ECD_04032 - oligoribonuclease, at 4,298,124 to 4,298,669
_04032
ECD_t00080: ECD_t00080 - tRNA-Gly, at 4,298,880 to 4,298,955
_t00080
ECD_t00081: ECD_t00081 - tRNA-Gly, at 4,298,992 to 4,299,067
_t00081
ECD_t00082: ECD_t00082 - tRNA-Gly, at 4,299,103 to 4,299,178
_t00082
ECD_04033: ECD_04033 - epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis, at 4,299,448 to 4,300,587
_04033
Position (kb)
4298
4299 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4298.070 kb on - strand at 4298.070 kb on - strand at 4298.070 kb on - strand at 4298.070 kb on - strand at 4298.070 kb on - strand at 4298.074 kb on + strand at 4298.074 kb on + strand at 4298.094 kb on + strand at 4298.094 kb on + strand at 4298.094 kb on + strand at 4298.096 kb on + strand at 4298.096 kb on + strand at 4298.096 kb on + strand at 4298.096 kb on + strand at 4298.096 kb on + strand at 4298.687 kb on + strand at 4298.688 kb on - strand at 4298.874 kb on + strand at 4298.874 kb on + strand at 4298.877 kb on + strand at 4299.521 kb on - strand at 4299.541 kb on + strand at 4299.565 kb on + strand, within ECD_04033 at 4299.566 kb on - strand, within ECD_04033 at 4299.663 kb on + strand, within ECD_04033 at 4299.663 kb on + strand, within ECD_04033
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,298,070 - -0.0 4,298,070 - -0.4 4,298,070 - -0.2 4,298,070 - +0.1 4,298,070 - +0.2 4,298,074 + +0.5 4,298,074 + -1.1 4,298,094 + -2.6 4,298,094 + -0.2 4,298,094 + +0.7 4,298,096 + +0.7 4,298,096 + +0.3 4,298,096 + -1.3 4,298,096 + +2.2 4,298,096 + -0.2 4,298,687 + +0.5 4,298,688 - -0.2 4,298,874 + -0.3 4,298,874 + +0.2 4,298,877 + -0.0 4,299,521 - -0.4 4,299,541 + -0.8 4,299,565 + ECD_04033 0.10 +0.7 4,299,566 - ECD_04033 0.10 -0.3 4,299,663 + ECD_04033 0.19 +0.6 4,299,663 + ECD_04033 0.19 +0.6
Or see this region's nucleotide sequence