Strain Fitness in Escherichia coli BL21 around ECD_04031

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04030 and ECD_04031 are separated by 96 nucleotidesECD_04031 and ECD_04032 are separated by 94 nucleotidesECD_04032 and ECD_t00080 are separated by 210 nucleotidesECD_t00080 and ECD_t00081 are separated by 36 nucleotides ECD_04030: ECD_04030 - phosphatidylserine decarboxylase, at 4,295,912 to 4,296,880 _04030 ECD_04031: ECD_04031 - ribosome small subunit-dependent GTPase A, at 4,296,977 to 4,298,029 _04031 ECD_04032: ECD_04032 - oligoribonuclease, at 4,298,124 to 4,298,669 _04032 ECD_t00080: ECD_t00080 - tRNA-Gly, at 4,298,880 to 4,298,955 _t00080 ECD_t00081: ECD_t00081 - tRNA-Gly, at 4,298,992 to 4,299,067 _t00081 Position (kb) 4296 4297 4298 4299Strain fitness (log2 ratio) -2 -1 0 1 2at 4296.007 kb on + strandat 4296.027 kb on - strand, within ECD_04030at 4296.923 kb on - strandat 4296.923 kb on - strandat 4296.967 kb on - strandat 4296.972 kb on - strandat 4296.972 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.074 kb on + strandat 4298.074 kb on + strandat 4298.094 kb on + strandat 4298.094 kb on + strandat 4298.094 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.687 kb on + strandat 4298.688 kb on - strandat 4298.874 kb on + strandat 4298.874 kb on + strandat 4298.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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4,296,007 + -0.2
4,296,027 - ECD_04030 0.12 -0.7
4,296,923 - -0.7
4,296,923 - -0.3
4,296,967 - +0.0
4,296,972 - +0.9
4,296,972 - -0.4
4,298,070 - -0.0
4,298,070 - -0.4
4,298,070 - -0.2
4,298,070 - +0.1
4,298,070 - +0.2
4,298,074 + +0.5
4,298,074 + -1.1
4,298,094 + -2.6
4,298,094 + -0.2
4,298,094 + +0.7
4,298,096 + +0.7
4,298,096 + +0.3
4,298,096 + -1.3
4,298,096 + +2.2
4,298,096 + -0.2
4,298,687 + +0.5
4,298,688 - -0.2
4,298,874 + -0.3
4,298,874 + +0.2
4,298,877 + -0.0

Or see this region's nucleotide sequence