Strain Fitness in Escherichia coli BL21 around ECD_03950

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03949 and ECD_03950 are separated by 416 nucleotidesECD_03950 and ECD_03951 are separated by 93 nucleotides ECD_03949: ECD_03949 - glutamate/aspartate:proton symporter, at 4,201,893 to 4,203,206 _03949 ECD_03950: ECD_03950 - Sel1 family TPR-like repeat protein, at 4,203,623 to 4,204,312 _03950 ECD_03951: ECD_03951 - formate dehydrogenase-H, selenopolypeptide subunit, at 4,204,406 to 4,206,553 _03951 Position (kb) 4203 4204 4205Strain fitness (log2 ratio) -2 -1 0 1at 4202.633 kb on - strand, within ECD_03949at 4202.687 kb on + strand, within ECD_03949at 4202.715 kb on + strand, within ECD_03949at 4202.772 kb on + strand, within ECD_03949at 4202.773 kb on - strand, within ECD_03949at 4202.855 kb on + strand, within ECD_03949at 4202.856 kb on - strand, within ECD_03949at 4202.856 kb on - strand, within ECD_03949at 4203.003 kb on - strand, within ECD_03949at 4203.007 kb on + strand, within ECD_03949at 4203.007 kb on + strand, within ECD_03949at 4203.008 kb on - strand, within ECD_03949at 4203.011 kb on + strand, within ECD_03949at 4203.054 kb on - strand, within ECD_03949at 4203.092 kb on + strandat 4203.160 kb on - strandat 4203.205 kb on - strandat 4203.271 kb on + strandat 4203.297 kb on + strandat 4203.320 kb on + strandat 4203.338 kb on + strandat 4203.339 kb on - strandat 4203.533 kb on + strandat 4203.620 kb on - strandat 4203.676 kb on + strandat 4203.677 kb on - strandat 4203.970 kb on + strand, within ECD_03950at 4203.970 kb on + strand, within ECD_03950at 4203.971 kb on - strand, within ECD_03950at 4203.974 kb on + strand, within ECD_03950at 4203.995 kb on + strand, within ECD_03950at 4204.147 kb on - strand, within ECD_03950at 4204.175 kb on - strand, within ECD_03950at 4204.236 kb on + strand, within ECD_03950at 4204.237 kb on - strand, within ECD_03950at 4204.237 kb on - strand, within ECD_03950at 4204.347 kb on + strandat 4204.347 kb on + strandat 4204.348 kb on - strandat 4204.404 kb on + strandat 4204.404 kb on + strandat 4204.404 kb on + strandat 4204.449 kb on + strandat 4204.449 kb on + strandat 4204.465 kb on - strandat 4204.516 kb on - strandat 4204.593 kb on + strandat 4204.593 kb on + strandat 4204.594 kb on - strandat 4204.594 kb on - strandat 4204.602 kb on + strandat 4204.602 kb on + strandat 4204.661 kb on - strand, within ECD_03951at 4204.827 kb on - strand, within ECD_03951at 4204.827 kb on - strand, within ECD_03951at 4204.929 kb on + strand, within ECD_03951at 4204.929 kb on + strand, within ECD_03951at 4204.930 kb on - strand, within ECD_03951at 4205.070 kb on + strand, within ECD_03951at 4205.070 kb on + strand, within ECD_03951at 4205.070 kb on + strand, within ECD_03951at 4205.071 kb on - strand, within ECD_03951at 4205.071 kb on - strand, within ECD_03951at 4205.230 kb on + strand, within ECD_03951at 4205.305 kb on + strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.309 kb on + strand, within ECD_03951at 4205.310 kb on - strand, within ECD_03951

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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4,202,633 - ECD_03949 0.56 -1.5
4,202,687 + ECD_03949 0.60 +0.8
4,202,715 + ECD_03949 0.63 -0.4
4,202,772 + ECD_03949 0.67 -0.4
4,202,773 - ECD_03949 0.67 -0.3
4,202,855 + ECD_03949 0.73 -0.4
4,202,856 - ECD_03949 0.73 -0.2
4,202,856 - ECD_03949 0.73 +0.7
4,203,003 - ECD_03949 0.84 -0.0
4,203,007 + ECD_03949 0.85 +0.0
4,203,007 + ECD_03949 0.85 +0.9
4,203,008 - ECD_03949 0.85 +0.3
4,203,011 + ECD_03949 0.85 +0.1
4,203,054 - ECD_03949 0.88 -0.1
4,203,092 + -0.2
4,203,160 - -0.1
4,203,205 - -1.1
4,203,271 + +0.0
4,203,297 + +0.1
4,203,320 + -0.9
4,203,338 + -0.7
4,203,339 - +0.1
4,203,533 + +0.0
4,203,620 - -0.5
4,203,676 + +0.4
4,203,677 - +0.1
4,203,970 + ECD_03950 0.50 +0.0
4,203,970 + ECD_03950 0.50 -0.9
4,203,971 - ECD_03950 0.50 -0.1
4,203,974 + ECD_03950 0.51 -1.6
4,203,995 + ECD_03950 0.54 -1.1
4,204,147 - ECD_03950 0.76 -0.4
4,204,175 - ECD_03950 0.80 -0.4
4,204,236 + ECD_03950 0.89 -0.4
4,204,237 - ECD_03950 0.89 -0.4
4,204,237 - ECD_03950 0.89 +0.4
4,204,347 + +0.6
4,204,347 + +0.2
4,204,348 - +0.6
4,204,404 + +0.6
4,204,404 + -2.2
4,204,404 + -0.4
4,204,449 + +0.6
4,204,449 + -0.8
4,204,465 - -0.2
4,204,516 - -0.8
4,204,593 + +0.2
4,204,593 + +0.9
4,204,594 - +1.0
4,204,594 - +0.4
4,204,602 + +0.1
4,204,602 + -0.0
4,204,661 - ECD_03951 0.12 -0.6
4,204,827 - ECD_03951 0.20 +0.8
4,204,827 - ECD_03951 0.20 +0.5
4,204,929 + ECD_03951 0.24 +0.0
4,204,929 + ECD_03951 0.24 +0.2
4,204,930 - ECD_03951 0.24 +0.2
4,205,070 + ECD_03951 0.31 +0.2
4,205,070 + ECD_03951 0.31 +0.0
4,205,070 + ECD_03951 0.31 +0.6
4,205,071 - ECD_03951 0.31 +0.5
4,205,071 - ECD_03951 0.31 -0.5
4,205,230 + ECD_03951 0.38 +0.7
4,205,305 + ECD_03951 0.42 -1.4
4,205,306 - ECD_03951 0.42 +0.3
4,205,306 - ECD_03951 0.42 +0.5
4,205,306 - ECD_03951 0.42 +0.6
4,205,306 - ECD_03951 0.42 +0.9
4,205,306 - ECD_03951 0.42 -0.1
4,205,309 + ECD_03951 0.42 -0.4
4,205,310 - ECD_03951 0.42 +0.5

Or see this region's nucleotide sequence