Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03864 and ECD_03865 are separated by 212 nucleotides ECD_03865 and ECD_03866 are separated by 409 nucleotides
ECD_03864: ECD_03864 - RNA polymerase, beta prime subunit, at 4,093,401 to 4,097,624
_03864
ECD_03865: ECD_03865 - stationary phase growth adaptation protein, at 4,097,837 to 4,098,376
_03865
ECD_03866: ECD_03866 - tyrosine lyase, involved in thiamine-thiazole moiety synthesis, at 4,098,786 to 4,099,919
_03866
Position (kb)
4097
4098
4099 Strain fitness (log2 ratio)
-2
-1
0
1 at 4097.741 kb on + strand at 4097.751 kb on + strand at 4097.751 kb on + strand at 4097.752 kb on - strand at 4097.806 kb on + strand at 4097.888 kb on - strand at 4097.898 kb on + strand, within ECD_03865 at 4097.898 kb on + strand, within ECD_03865 at 4097.927 kb on + strand, within ECD_03865 at 4097.928 kb on - strand, within ECD_03865 at 4097.928 kb on - strand, within ECD_03865 at 4097.959 kb on - strand, within ECD_03865 at 4097.981 kb on + strand, within ECD_03865 at 4097.982 kb on - strand, within ECD_03865 at 4097.982 kb on - strand, within ECD_03865 at 4098.090 kb on - strand, within ECD_03865 at 4098.091 kb on + strand, within ECD_03865 at 4098.092 kb on - strand, within ECD_03865 at 4098.092 kb on - strand, within ECD_03865 at 4098.092 kb on - strand, within ECD_03865 at 4098.166 kb on + strand, within ECD_03865 at 4098.166 kb on + strand, within ECD_03865 at 4098.166 kb on + strand, within ECD_03865 at 4098.167 kb on - strand, within ECD_03865 at 4098.167 kb on - strand, within ECD_03865 at 4098.167 kb on - strand, within ECD_03865 at 4098.170 kb on + strand, within ECD_03865 at 4098.170 kb on + strand, within ECD_03865 at 4098.171 kb on - strand, within ECD_03865 at 4098.171 kb on - strand, within ECD_03865 at 4098.171 kb on - strand, within ECD_03865 at 4098.171 kb on - strand, within ECD_03865 at 4098.192 kb on + strand, within ECD_03865 at 4098.193 kb on - strand, within ECD_03865 at 4098.193 kb on - strand, within ECD_03865 at 4098.206 kb on - strand, within ECD_03865 at 4098.268 kb on - strand, within ECD_03865 at 4098.268 kb on - strand, within ECD_03865 at 4098.268 kb on - strand, within ECD_03865 at 4098.271 kb on + strand, within ECD_03865 at 4098.272 kb on - strand, within ECD_03865 at 4098.304 kb on + strand, within ECD_03865 at 4098.349 kb on + strand at 4098.389 kb on + strand at 4098.413 kb on - strand at 4098.422 kb on - strand at 4098.533 kb on - strand at 4098.549 kb on + strand at 4098.550 kb on - strand at 4098.550 kb on - strand at 4098.550 kb on - strand at 4098.570 kb on - strand at 4098.570 kb on - strand at 4098.632 kb on + strand at 4098.775 kb on + strand at 4098.775 kb on + strand at 4098.776 kb on - strand at 4098.776 kb on - strand at 4098.776 kb on - strand at 4099.080 kb on + strand, within ECD_03866 at 4099.124 kb on + strand, within ECD_03866 at 4099.125 kb on - strand, within ECD_03866 at 4099.189 kb on - strand, within ECD_03866 at 4099.208 kb on + strand, within ECD_03866 at 4099.208 kb on + strand, within ECD_03866 at 4099.208 kb on + strand, within ECD_03866 at 4099.209 kb on - strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.260 kb on + strand, within ECD_03866 at 4099.265 kb on + strand, within ECD_03866 at 4099.266 kb on - strand, within ECD_03866 at 4099.351 kb on + strand, within ECD_03866 at 4099.352 kb on - strand, within ECD_03866 at 4099.366 kb on + strand, within ECD_03866 at 4099.366 kb on + strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,097,741 + -0.5 4,097,751 + +0.3 4,097,751 + +0.2 4,097,752 - +0.1 4,097,806 + +0.6 4,097,888 - +0.3 4,097,898 + ECD_03865 0.11 -0.1 4,097,898 + ECD_03865 0.11 -2.4 4,097,927 + ECD_03865 0.17 -0.3 4,097,928 - ECD_03865 0.17 -0.4 4,097,928 - ECD_03865 0.17 -0.3 4,097,959 - ECD_03865 0.23 -0.0 4,097,981 + ECD_03865 0.27 -0.2 4,097,982 - ECD_03865 0.27 -0.1 4,097,982 - ECD_03865 0.27 -0.8 4,098,090 - ECD_03865 0.47 +0.2 4,098,091 + ECD_03865 0.47 -1.2 4,098,092 - ECD_03865 0.47 -0.6 4,098,092 - ECD_03865 0.47 +0.2 4,098,092 - ECD_03865 0.47 +0.4 4,098,166 + ECD_03865 0.61 -0.1 4,098,166 + ECD_03865 0.61 -1.1 4,098,166 + ECD_03865 0.61 +0.0 4,098,167 - ECD_03865 0.61 +1.4 4,098,167 - ECD_03865 0.61 -0.4 4,098,167 - ECD_03865 0.61 +0.7 4,098,170 + ECD_03865 0.62 -0.2 4,098,170 + ECD_03865 0.62 +0.1 4,098,171 - ECD_03865 0.62 +0.0 4,098,171 - ECD_03865 0.62 -0.4 4,098,171 - ECD_03865 0.62 -0.8 4,098,171 - ECD_03865 0.62 -0.3 4,098,192 + ECD_03865 0.66 -0.9 4,098,193 - ECD_03865 0.66 +0.3 4,098,193 - ECD_03865 0.66 +0.3 4,098,206 - ECD_03865 0.68 -0.6 4,098,268 - ECD_03865 0.80 -0.3 4,098,268 - ECD_03865 0.80 -0.4 4,098,268 - ECD_03865 0.80 +0.2 4,098,271 + ECD_03865 0.80 +0.2 4,098,272 - ECD_03865 0.81 +0.5 4,098,304 + ECD_03865 0.86 -1.1 4,098,349 + +0.2 4,098,389 + -1.3 4,098,413 - +0.3 4,098,422 - +0.3 4,098,533 - +0.9 4,098,549 + +0.2 4,098,550 - -0.3 4,098,550 - +0.9 4,098,550 - +0.5 4,098,570 - +0.6 4,098,570 - +0.5 4,098,632 + +0.5 4,098,775 + -0.7 4,098,775 + -0.3 4,098,776 - +0.3 4,098,776 - -0.3 4,098,776 - -0.8 4,099,080 + ECD_03866 0.26 -1.6 4,099,124 + ECD_03866 0.30 -0.9 4,099,125 - ECD_03866 0.30 -0.1 4,099,189 - ECD_03866 0.36 -0.1 4,099,208 + ECD_03866 0.37 +1.0 4,099,208 + ECD_03866 0.37 -0.3 4,099,208 + ECD_03866 0.37 -0.7 4,099,209 - ECD_03866 0.37 -1.5 4,099,210 + ECD_03866 0.37 +0.2 4,099,210 + ECD_03866 0.37 +1.5 4,099,210 + ECD_03866 0.37 -0.9 4,099,210 + ECD_03866 0.37 +0.0 4,099,210 + ECD_03866 0.37 -0.1 4,099,210 + ECD_03866 0.37 +0.4 4,099,210 + ECD_03866 0.37 -0.1 4,099,211 - ECD_03866 0.37 +0.0 4,099,211 - ECD_03866 0.37 -0.1 4,099,211 - ECD_03866 0.37 +0.8 4,099,211 - ECD_03866 0.37 -0.1 4,099,260 + ECD_03866 0.42 -0.4 4,099,265 + ECD_03866 0.42 +0.1 4,099,266 - ECD_03866 0.42 -0.3 4,099,351 + ECD_03866 0.50 -0.1 4,099,352 - ECD_03866 0.50 +0.2 4,099,366 + ECD_03866 0.51 +0.8 4,099,366 + ECD_03866 0.51 -0.1 4,099,367 - ECD_03866 0.51 +0.3 4,099,367 - ECD_03866 0.51 +0.2 4,099,367 - ECD_03866 0.51 +0.3 4,099,367 - ECD_03866 0.51 -0.3 4,099,367 - ECD_03866 0.51 +0.6 4,099,367 - ECD_03866 0.51 -0.2 4,099,367 - ECD_03866 0.51 +1.1 4,099,367 - ECD_03866 0.51 +0.7
Or see this region's nucleotide sequence