Strain Fitness in Escherichia coli BL21 around ECD_03301

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03299 and ECD_03300 are separated by 1 nucleotidesECD_03300 and ECD_03301 overlap by 4 nucleotidesECD_03301 and ECD_03302 are separated by 97 nucleotides ECD_03299: ECD_03299 - sn-glycerol-3-phosphate ABC transporter ATPase, at 3,450,482 to 3,451,552 _03299 ECD_03300: ECD_03300 - sn-glycerol-3-phosphate ABC transporter permease, at 3,451,554 to 3,452,399 _03300 ECD_03301: ECD_03301 - sn-glycerol-3-phosphate ABC transporter permease, at 3,452,396 to 3,453,283 _03301 ECD_03302: ECD_03302 - sn-glycerol-3-phosphate ABC transporter periplasmic binding protein, at 3,453,381 to 3,454,697 _03302 Position (kb) 3452 3453 3454Strain fitness (log2 ratio) -2 -1 0 1 2at 3451.492 kb on + strandat 3451.493 kb on - strandat 3451.493 kb on - strandat 3451.493 kb on - strandat 3451.507 kb on + strandat 3451.555 kb on + strandat 3451.555 kb on + strandat 3451.555 kb on + strandat 3451.771 kb on + strand, within ECD_03300at 3451.772 kb on - strand, within ECD_03300at 3451.775 kb on + strand, within ECD_03300at 3451.926 kb on - strand, within ECD_03300at 3451.967 kb on - strand, within ECD_03300at 3452.015 kb on + strand, within ECD_03300at 3452.016 kb on - strand, within ECD_03300at 3452.020 kb on - strand, within ECD_03300at 3452.020 kb on - strand, within ECD_03300at 3452.020 kb on - strand, within ECD_03300at 3452.138 kb on + strand, within ECD_03300at 3452.192 kb on + strand, within ECD_03300at 3452.275 kb on + strand, within ECD_03300at 3452.317 kb on + strandat 3452.318 kb on - strandat 3452.360 kb on + strandat 3452.361 kb on - strandat 3452.370 kb on + strandat 3452.371 kb on - strandat 3452.424 kb on + strandat 3452.424 kb on + strandat 3452.425 kb on - strandat 3452.425 kb on - strandat 3452.425 kb on - strandat 3452.510 kb on - strand, within ECD_03301at 3452.523 kb on + strand, within ECD_03301at 3452.524 kb on - strand, within ECD_03301at 3452.530 kb on + strand, within ECD_03301at 3452.531 kb on - strand, within ECD_03301at 3452.531 kb on - strand, within ECD_03301at 3452.611 kb on - strand, within ECD_03301at 3452.611 kb on - strand, within ECD_03301at 3452.611 kb on - strand, within ECD_03301at 3452.611 kb on - strand, within ECD_03301at 3452.624 kb on + strand, within ECD_03301at 3452.671 kb on + strand, within ECD_03301at 3452.671 kb on + strand, within ECD_03301at 3452.752 kb on - strand, within ECD_03301at 3452.786 kb on + strand, within ECD_03301at 3452.941 kb on - strand, within ECD_03301at 3452.964 kb on + strand, within ECD_03301at 3452.965 kb on - strand, within ECD_03301at 3452.988 kb on + strand, within ECD_03301at 3452.988 kb on + strand, within ECD_03301at 3452.988 kb on + strand, within ECD_03301at 3452.988 kb on + strand, within ECD_03301at 3452.988 kb on + strand, within ECD_03301at 3452.989 kb on - strand, within ECD_03301at 3452.989 kb on - strand, within ECD_03301at 3452.989 kb on - strand, within ECD_03301at 3453.057 kb on - strand, within ECD_03301at 3453.081 kb on + strand, within ECD_03301at 3453.084 kb on + strand, within ECD_03301at 3453.084 kb on + strand, within ECD_03301at 3453.084 kb on + strand, within ECD_03301at 3453.084 kb on + strand, within ECD_03301at 3453.084 kb on + strand, within ECD_03301at 3453.084 kb on + strand, within ECD_03301at 3453.085 kb on - strand, within ECD_03301at 3453.196 kb on + strandat 3453.206 kb on - strandat 3453.241 kb on - strandat 3453.284 kb on + strandat 3453.353 kb on - strandat 3453.374 kb on - strandat 3453.564 kb on - strand, within ECD_03302at 3453.637 kb on + strand, within ECD_03302at 3453.637 kb on + strand, within ECD_03302at 3453.736 kb on + strand, within ECD_03302at 3453.737 kb on - strand, within ECD_03302at 3453.737 kb on - strand, within ECD_03302at 3453.737 kb on - strand, within ECD_03302at 3453.737 kb on - strand, within ECD_03302at 3453.747 kb on - strand, within ECD_03302at 3453.837 kb on + strand, within ECD_03302at 3453.838 kb on - strand, within ECD_03302at 3453.845 kb on - strand, within ECD_03302at 3453.845 kb on - strand, within ECD_03302at 3453.917 kb on + strand, within ECD_03302at 3453.920 kb on - strand, within ECD_03302at 3453.920 kb on - strand, within ECD_03302at 3453.920 kb on - strand, within ECD_03302at 3453.956 kb on - strand, within ECD_03302at 3453.956 kb on - strand, within ECD_03302at 3454.174 kb on + strand, within ECD_03302at 3454.175 kb on - strand, within ECD_03302at 3454.249 kb on + strand, within ECD_03302at 3454.249 kb on + strand, within ECD_03302at 3454.249 kb on + strand, within ECD_03302at 3454.250 kb on - strand, within ECD_03302at 3454.252 kb on + strand, within ECD_03302at 3454.253 kb on - strand, within ECD_03302at 3454.253 kb on - strand, within ECD_03302

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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3,451,492 + +0.2
3,451,493 - +0.4
3,451,493 - -0.3
3,451,493 - +0.2
3,451,507 + -0.3
3,451,555 + +0.8
3,451,555 + +0.0
3,451,555 + -0.3
3,451,771 + ECD_03300 0.26 +0.4
3,451,772 - ECD_03300 0.26 -0.6
3,451,775 + ECD_03300 0.26 +1.4
3,451,926 - ECD_03300 0.44 +0.0
3,451,967 - ECD_03300 0.49 -0.4
3,452,015 + ECD_03300 0.54 -0.1
3,452,016 - ECD_03300 0.55 +2.4
3,452,020 - ECD_03300 0.55 -0.2
3,452,020 - ECD_03300 0.55 -0.9
3,452,020 - ECD_03300 0.55 +0.6
3,452,138 + ECD_03300 0.69 +0.1
3,452,192 + ECD_03300 0.75 +1.2
3,452,275 + ECD_03300 0.85 -0.2
3,452,317 + +0.0
3,452,318 - +0.3
3,452,360 + -0.3
3,452,361 - -0.3
3,452,370 + -0.2
3,452,371 - +0.6
3,452,424 + -1.1
3,452,424 + +1.0
3,452,425 - -0.4
3,452,425 - +0.5
3,452,425 - -1.0
3,452,510 - ECD_03301 0.13 -0.0
3,452,523 + ECD_03301 0.14 +0.8
3,452,524 - ECD_03301 0.14 -0.7
3,452,530 + ECD_03301 0.15 +1.4
3,452,531 - ECD_03301 0.15 +0.5
3,452,531 - ECD_03301 0.15 +1.6
3,452,611 - ECD_03301 0.24 -0.3
3,452,611 - ECD_03301 0.24 +0.0
3,452,611 - ECD_03301 0.24 +0.3
3,452,611 - ECD_03301 0.24 +0.7
3,452,624 + ECD_03301 0.26 -0.3
3,452,671 + ECD_03301 0.31 -0.4
3,452,671 + ECD_03301 0.31 +0.1
3,452,752 - ECD_03301 0.40 -0.9
3,452,786 + ECD_03301 0.44 +0.2
3,452,941 - ECD_03301 0.61 +0.1
3,452,964 + ECD_03301 0.64 +1.0
3,452,965 - ECD_03301 0.64 +0.1
3,452,988 + ECD_03301 0.67 -0.8
3,452,988 + ECD_03301 0.67 -0.4
3,452,988 + ECD_03301 0.67 +0.2
3,452,988 + ECD_03301 0.67 +1.0
3,452,988 + ECD_03301 0.67 +0.1
3,452,989 - ECD_03301 0.67 +0.6
3,452,989 - ECD_03301 0.67 -1.8
3,452,989 - ECD_03301 0.67 -0.7
3,453,057 - ECD_03301 0.74 +0.0
3,453,081 + ECD_03301 0.77 +0.4
3,453,084 + ECD_03301 0.77 -0.1
3,453,084 + ECD_03301 0.77 +0.1
3,453,084 + ECD_03301 0.77 -0.2
3,453,084 + ECD_03301 0.77 +0.6
3,453,084 + ECD_03301 0.77 -0.1
3,453,084 + ECD_03301 0.77 -1.3
3,453,085 - ECD_03301 0.78 -1.2
3,453,196 + +0.2
3,453,206 - +0.6
3,453,241 - +0.8
3,453,284 + -0.3
3,453,353 - +0.0
3,453,374 - +0.2
3,453,564 - ECD_03302 0.14 -1.4
3,453,637 + ECD_03302 0.19 +0.7
3,453,637 + ECD_03302 0.19 -0.2
3,453,736 + ECD_03302 0.27 +0.6
3,453,737 - ECD_03302 0.27 -0.4
3,453,737 - ECD_03302 0.27 +0.7
3,453,737 - ECD_03302 0.27 -0.8
3,453,737 - ECD_03302 0.27 +0.4
3,453,747 - ECD_03302 0.28 +0.4
3,453,837 + ECD_03302 0.35 -2.4
3,453,838 - ECD_03302 0.35 +0.1
3,453,845 - ECD_03302 0.35 +0.0
3,453,845 - ECD_03302 0.35 +0.6
3,453,917 + ECD_03302 0.41 -0.1
3,453,920 - ECD_03302 0.41 -0.4
3,453,920 - ECD_03302 0.41 +0.1
3,453,920 - ECD_03302 0.41 +0.1
3,453,956 - ECD_03302 0.44 +0.1
3,453,956 - ECD_03302 0.44 +0.6
3,454,174 + ECD_03302 0.60 -0.6
3,454,175 - ECD_03302 0.60 -0.1
3,454,249 + ECD_03302 0.66 +1.0
3,454,249 + ECD_03302 0.66 -0.5
3,454,249 + ECD_03302 0.66 -0.0
3,454,250 - ECD_03302 0.66 +0.8
3,454,252 + ECD_03302 0.66 -0.8
3,454,253 - ECD_03302 0.66 -0.1
3,454,253 - ECD_03302 0.66 -1.8

Or see this region's nucleotide sequence