Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03299 and ECD_03300 are separated by 1 nucleotides ECD_03300 and ECD_03301 overlap by 4 nucleotides ECD_03301 and ECD_03302 are separated by 97 nucleotides
ECD_03299: ECD_03299 - sn-glycerol-3-phosphate ABC transporter ATPase, at 3,450,482 to 3,451,552
_03299
ECD_03300: ECD_03300 - sn-glycerol-3-phosphate ABC transporter permease, at 3,451,554 to 3,452,399
_03300
ECD_03301: ECD_03301 - sn-glycerol-3-phosphate ABC transporter permease, at 3,452,396 to 3,453,283
_03301
ECD_03302: ECD_03302 - sn-glycerol-3-phosphate ABC transporter periplasmic binding protein, at 3,453,381 to 3,454,697
_03302
Position (kb)
3452
3453
3454 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3451.492 kb on + strand at 3451.493 kb on - strand at 3451.493 kb on - strand at 3451.493 kb on - strand at 3451.507 kb on + strand at 3451.555 kb on + strand at 3451.555 kb on + strand at 3451.555 kb on + strand at 3451.771 kb on + strand, within ECD_03300 at 3451.772 kb on - strand, within ECD_03300 at 3451.775 kb on + strand, within ECD_03300 at 3451.926 kb on - strand, within ECD_03300 at 3451.967 kb on - strand, within ECD_03300 at 3452.015 kb on + strand, within ECD_03300 at 3452.016 kb on - strand, within ECD_03300 at 3452.020 kb on - strand, within ECD_03300 at 3452.020 kb on - strand, within ECD_03300 at 3452.020 kb on - strand, within ECD_03300 at 3452.138 kb on + strand, within ECD_03300 at 3452.192 kb on + strand, within ECD_03300 at 3452.275 kb on + strand, within ECD_03300 at 3452.317 kb on + strand at 3452.318 kb on - strand at 3452.360 kb on + strand at 3452.361 kb on - strand at 3452.370 kb on + strand at 3452.371 kb on - strand at 3452.424 kb on + strand at 3452.424 kb on + strand at 3452.425 kb on - strand at 3452.425 kb on - strand at 3452.425 kb on - strand at 3452.510 kb on - strand, within ECD_03301 at 3452.523 kb on + strand, within ECD_03301 at 3452.524 kb on - strand, within ECD_03301 at 3452.530 kb on + strand, within ECD_03301 at 3452.531 kb on - strand, within ECD_03301 at 3452.531 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.624 kb on + strand, within ECD_03301 at 3452.671 kb on + strand, within ECD_03301 at 3452.671 kb on + strand, within ECD_03301 at 3452.752 kb on - strand, within ECD_03301 at 3452.786 kb on + strand, within ECD_03301 at 3452.941 kb on - strand, within ECD_03301 at 3452.964 kb on + strand, within ECD_03301 at 3452.965 kb on - strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.989 kb on - strand, within ECD_03301 at 3452.989 kb on - strand, within ECD_03301 at 3452.989 kb on - strand, within ECD_03301 at 3453.057 kb on - strand, within ECD_03301 at 3453.081 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.085 kb on - strand, within ECD_03301 at 3453.196 kb on + strand at 3453.206 kb on - strand at 3453.241 kb on - strand at 3453.284 kb on + strand at 3453.353 kb on - strand at 3453.374 kb on - strand at 3453.564 kb on - strand, within ECD_03302 at 3453.637 kb on + strand, within ECD_03302 at 3453.637 kb on + strand, within ECD_03302 at 3453.736 kb on + strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.747 kb on - strand, within ECD_03302 at 3453.837 kb on + strand, within ECD_03302 at 3453.838 kb on - strand, within ECD_03302 at 3453.845 kb on - strand, within ECD_03302 at 3453.845 kb on - strand, within ECD_03302 at 3453.917 kb on + strand, within ECD_03302 at 3453.920 kb on - strand, within ECD_03302 at 3453.920 kb on - strand, within ECD_03302 at 3453.920 kb on - strand, within ECD_03302 at 3453.956 kb on - strand, within ECD_03302 at 3453.956 kb on - strand, within ECD_03302 at 3454.174 kb on + strand, within ECD_03302 at 3454.175 kb on - strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.250 kb on - strand, within ECD_03302 at 3454.252 kb on + strand, within ECD_03302 at 3454.253 kb on - strand, within ECD_03302 at 3454.253 kb on - strand, within ECD_03302
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,451,492 + +0.2 3,451,493 - +0.4 3,451,493 - -0.3 3,451,493 - +0.2 3,451,507 + -0.3 3,451,555 + +0.8 3,451,555 + +0.0 3,451,555 + -0.3 3,451,771 + ECD_03300 0.26 +0.4 3,451,772 - ECD_03300 0.26 -0.6 3,451,775 + ECD_03300 0.26 +1.4 3,451,926 - ECD_03300 0.44 +0.0 3,451,967 - ECD_03300 0.49 -0.4 3,452,015 + ECD_03300 0.54 -0.1 3,452,016 - ECD_03300 0.55 +2.4 3,452,020 - ECD_03300 0.55 -0.2 3,452,020 - ECD_03300 0.55 -0.9 3,452,020 - ECD_03300 0.55 +0.6 3,452,138 + ECD_03300 0.69 +0.1 3,452,192 + ECD_03300 0.75 +1.2 3,452,275 + ECD_03300 0.85 -0.2 3,452,317 + +0.0 3,452,318 - +0.3 3,452,360 + -0.3 3,452,361 - -0.3 3,452,370 + -0.2 3,452,371 - +0.6 3,452,424 + -1.1 3,452,424 + +1.0 3,452,425 - -0.4 3,452,425 - +0.5 3,452,425 - -1.0 3,452,510 - ECD_03301 0.13 -0.0 3,452,523 + ECD_03301 0.14 +0.8 3,452,524 - ECD_03301 0.14 -0.7 3,452,530 + ECD_03301 0.15 +1.4 3,452,531 - ECD_03301 0.15 +0.5 3,452,531 - ECD_03301 0.15 +1.6 3,452,611 - ECD_03301 0.24 -0.3 3,452,611 - ECD_03301 0.24 +0.0 3,452,611 - ECD_03301 0.24 +0.3 3,452,611 - ECD_03301 0.24 +0.7 3,452,624 + ECD_03301 0.26 -0.3 3,452,671 + ECD_03301 0.31 -0.4 3,452,671 + ECD_03301 0.31 +0.1 3,452,752 - ECD_03301 0.40 -0.9 3,452,786 + ECD_03301 0.44 +0.2 3,452,941 - ECD_03301 0.61 +0.1 3,452,964 + ECD_03301 0.64 +1.0 3,452,965 - ECD_03301 0.64 +0.1 3,452,988 + ECD_03301 0.67 -0.8 3,452,988 + ECD_03301 0.67 -0.4 3,452,988 + ECD_03301 0.67 +0.2 3,452,988 + ECD_03301 0.67 +1.0 3,452,988 + ECD_03301 0.67 +0.1 3,452,989 - ECD_03301 0.67 +0.6 3,452,989 - ECD_03301 0.67 -1.8 3,452,989 - ECD_03301 0.67 -0.7 3,453,057 - ECD_03301 0.74 +0.0 3,453,081 + ECD_03301 0.77 +0.4 3,453,084 + ECD_03301 0.77 -0.1 3,453,084 + ECD_03301 0.77 +0.1 3,453,084 + ECD_03301 0.77 -0.2 3,453,084 + ECD_03301 0.77 +0.6 3,453,084 + ECD_03301 0.77 -0.1 3,453,084 + ECD_03301 0.77 -1.3 3,453,085 - ECD_03301 0.78 -1.2 3,453,196 + +0.2 3,453,206 - +0.6 3,453,241 - +0.8 3,453,284 + -0.3 3,453,353 - +0.0 3,453,374 - +0.2 3,453,564 - ECD_03302 0.14 -1.4 3,453,637 + ECD_03302 0.19 +0.7 3,453,637 + ECD_03302 0.19 -0.2 3,453,736 + ECD_03302 0.27 +0.6 3,453,737 - ECD_03302 0.27 -0.4 3,453,737 - ECD_03302 0.27 +0.7 3,453,737 - ECD_03302 0.27 -0.8 3,453,737 - ECD_03302 0.27 +0.4 3,453,747 - ECD_03302 0.28 +0.4 3,453,837 + ECD_03302 0.35 -2.4 3,453,838 - ECD_03302 0.35 +0.1 3,453,845 - ECD_03302 0.35 +0.0 3,453,845 - ECD_03302 0.35 +0.6 3,453,917 + ECD_03302 0.41 -0.1 3,453,920 - ECD_03302 0.41 -0.4 3,453,920 - ECD_03302 0.41 +0.1 3,453,920 - ECD_03302 0.41 +0.1 3,453,956 - ECD_03302 0.44 +0.1 3,453,956 - ECD_03302 0.44 +0.6 3,454,174 + ECD_03302 0.60 -0.6 3,454,175 - ECD_03302 0.60 -0.1 3,454,249 + ECD_03302 0.66 +1.0 3,454,249 + ECD_03302 0.66 -0.5 3,454,249 + ECD_03302 0.66 -0.0 3,454,250 - ECD_03302 0.66 +0.8 3,454,252 + ECD_03302 0.66 -0.8 3,454,253 - ECD_03302 0.66 -0.1 3,454,253 - ECD_03302 0.66 -1.8
Or see this region's nucleotide sequence