Strain Fitness in Escherichia coli BL21 around ECD_03139

Experiment: NophageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03138 and ECD_03139 are separated by 45 nucleotidesECD_03139 and ECD_03140 are separated by 21 nucleotides ECD_03138: ECD_03138 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase, at 3,295,384 to 3,296,331 _03138 ECD_03139: ECD_03139 - 16S rRNA m(5)C967 methyltransferase, SAM-dependent, at 3,296,377 to 3,297,666 _03139 ECD_03140: ECD_03140 - NAD-binding component of TrK potassium transporter, at 3,297,688 to 3,299,064 _03140 Position (kb) 3296 3297 3298Strain fitness (log2 ratio) -2 -1 0 1at 3296.345 kb on + strandat 3296.611 kb on + strand, within ECD_03139at 3296.632 kb on + strand, within ECD_03139at 3296.703 kb on + strand, within ECD_03139at 3296.703 kb on + strand, within ECD_03139at 3296.771 kb on + strand, within ECD_03139at 3296.774 kb on + strand, within ECD_03139at 3296.910 kb on + strand, within ECD_03139at 3297.002 kb on + strand, within ECD_03139at 3297.002 kb on + strand, within ECD_03139at 3297.002 kb on + strand, within ECD_03139at 3297.258 kb on + strand, within ECD_03139at 3297.338 kb on + strand, within ECD_03139at 3297.387 kb on + strand, within ECD_03139at 3297.490 kb on + strand, within ECD_03139at 3297.522 kb on + strand, within ECD_03139at 3297.522 kb on + strand, within ECD_03139at 3297.534 kb on + strand, within ECD_03139

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
remove
3,296,345 + -0.7
3,296,611 + ECD_03139 0.18 -0.2
3,296,632 + ECD_03139 0.20 -0.2
3,296,703 + ECD_03139 0.25 +1.7
3,296,703 + ECD_03139 0.25 -1.2
3,296,771 + ECD_03139 0.31 -0.5
3,296,774 + ECD_03139 0.31 -1.2
3,296,910 + ECD_03139 0.41 -1.1
3,297,002 + ECD_03139 0.48 -1.7
3,297,002 + ECD_03139 0.48 +0.3
3,297,002 + ECD_03139 0.48 +0.0
3,297,258 + ECD_03139 0.68 -0.7
3,297,338 + ECD_03139 0.74 -1.7
3,297,387 + ECD_03139 0.78 +0.4
3,297,490 + ECD_03139 0.86 +0.0
3,297,522 + ECD_03139 0.89 -0.2
3,297,522 + ECD_03139 0.89 +0.8
3,297,534 + ECD_03139 0.90 -2.4

Or see this region's nucleotide sequence