Strain Fitness in Escherichia coli BL21 around ECD_02859

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02857 and ECD_02858 are separated by 11 nucleotidesECD_02858 and ECD_02859 overlap by 1 nucleotidesECD_02859 and ECD_02860 are separated by 45 nucleotidesECD_02860 and ECD_02861 are separated by 31 nucleotides ECD_02857: ECD_02857 - hypothetical protein, at 2,997,097 to 2,997,657 _02857 ECD_02858: ECD_02858 - hypothetical protein, at 2,997,669 to 2,998,493 _02858 ECD_02859: ECD_02859 - putative inner membrane polysaccharide flippase, at 2,998,493 to 2,999,842 _02859 ECD_02860: ECD_02860 - putative ATP-binding protein, at 2,999,888 to 3,000,646 _02860 ECD_02861: ECD_02861 - putative ATP-binding protein, at 3,000,678 to 3,001,391 _02861 Position (kb) 2998 2999 3000Strain fitness (log2 ratio) -3 -2 -1 0 1at 2997.561 kb on - strand, within ECD_02857at 2997.639 kb on + strandat 2997.671 kb on - strandat 2997.742 kb on + strandat 2997.743 kb on - strandat 2997.743 kb on - strandat 2997.789 kb on - strand, within ECD_02858at 2997.829 kb on - strand, within ECD_02858at 2997.867 kb on + strand, within ECD_02858at 2998.002 kb on + strand, within ECD_02858at 2998.011 kb on + strand, within ECD_02858at 2998.027 kb on - strand, within ECD_02858at 2998.222 kb on + strand, within ECD_02858at 2998.222 kb on + strand, within ECD_02858at 2998.223 kb on - strand, within ECD_02858at 2998.238 kb on - strand, within ECD_02858at 2998.355 kb on - strand, within ECD_02858at 2998.379 kb on + strand, within ECD_02858at 2998.380 kb on - strand, within ECD_02858at 2998.387 kb on - strand, within ECD_02858at 2998.519 kb on - strandat 2998.519 kb on - strandat 2998.550 kb on + strandat 2998.562 kb on + strandat 2998.599 kb on + strandat 2998.659 kb on + strand, within ECD_02859at 2998.788 kb on + strand, within ECD_02859at 2998.789 kb on - strand, within ECD_02859at 2998.801 kb on - strand, within ECD_02859at 2998.905 kb on - strand, within ECD_02859at 2998.935 kb on - strand, within ECD_02859at 2999.138 kb on - strand, within ECD_02859at 2999.223 kb on + strand, within ECD_02859at 2999.223 kb on + strand, within ECD_02859at 2999.223 kb on + strand, within ECD_02859at 2999.224 kb on - strand, within ECD_02859at 2999.224 kb on - strand, within ECD_02859at 2999.224 kb on - strand, within ECD_02859at 2999.224 kb on - strand, within ECD_02859at 2999.254 kb on - strand, within ECD_02859at 2999.293 kb on - strand, within ECD_02859at 2999.345 kb on + strand, within ECD_02859at 2999.369 kb on + strand, within ECD_02859at 2999.369 kb on + strand, within ECD_02859at 2999.370 kb on - strand, within ECD_02859at 2999.428 kb on - strand, within ECD_02859at 2999.466 kb on - strand, within ECD_02859at 2999.490 kb on - strand, within ECD_02859at 2999.635 kb on + strand, within ECD_02859at 2999.831 kb on - strandat 2999.869 kb on - strandat 2999.889 kb on + strandat 2999.890 kb on - strandat 2999.964 kb on + strand, within ECD_02860at 3000.052 kb on - strand, within ECD_02860at 3000.143 kb on + strand, within ECD_02860at 3000.143 kb on + strand, within ECD_02860at 3000.143 kb on + strand, within ECD_02860at 3000.223 kb on - strand, within ECD_02860at 3000.223 kb on - strand, within ECD_02860at 3000.223 kb on - strand, within ECD_02860at 3000.303 kb on - strand, within ECD_02860at 3000.303 kb on - strand, within ECD_02860at 3000.303 kb on - strand, within ECD_02860at 3000.333 kb on + strand, within ECD_02860at 3000.333 kb on + strand, within ECD_02860at 3000.334 kb on - strand, within ECD_02860at 3000.337 kb on + strand, within ECD_02860at 3000.337 kb on + strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.338 kb on - strand, within ECD_02860at 3000.353 kb on + strand, within ECD_02860at 3000.483 kb on + strand, within ECD_02860at 3000.617 kb on - strandat 3000.617 kb on - strandat 3000.619 kb on + strandat 3000.620 kb on - strandat 3000.620 kb on - strandat 3000.789 kb on - strand, within ECD_02861

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,997,561 - ECD_02857 0.83 +0.1
2,997,639 + -0.2
2,997,671 - -0.7
2,997,742 + +1.2
2,997,743 - +1.0
2,997,743 - +0.4
2,997,789 - ECD_02858 0.15 -0.2
2,997,829 - ECD_02858 0.19 -1.7
2,997,867 + ECD_02858 0.24 -0.6
2,998,002 + ECD_02858 0.40 -0.6
2,998,011 + ECD_02858 0.41 -2.0
2,998,027 - ECD_02858 0.43 -1.1
2,998,222 + ECD_02858 0.67 -0.2
2,998,222 + ECD_02858 0.67 -0.3
2,998,223 - ECD_02858 0.67 -0.2
2,998,238 - ECD_02858 0.69 -0.7
2,998,355 - ECD_02858 0.83 -3.0
2,998,379 + ECD_02858 0.86 +0.3
2,998,380 - ECD_02858 0.86 +1.1
2,998,387 - ECD_02858 0.87 -1.0
2,998,519 - +0.8
2,998,519 - -0.3
2,998,550 + -1.6
2,998,562 + -0.5
2,998,599 + +0.1
2,998,659 + ECD_02859 0.12 -0.2
2,998,788 + ECD_02859 0.22 +0.3
2,998,789 - ECD_02859 0.22 +0.3
2,998,801 - ECD_02859 0.23 -1.3
2,998,905 - ECD_02859 0.31 +0.1
2,998,935 - ECD_02859 0.33 +0.6
2,999,138 - ECD_02859 0.48 -0.8
2,999,223 + ECD_02859 0.54 -0.3
2,999,223 + ECD_02859 0.54 -0.1
2,999,223 + ECD_02859 0.54 -1.9
2,999,224 - ECD_02859 0.54 -0.5
2,999,224 - ECD_02859 0.54 +0.2
2,999,224 - ECD_02859 0.54 -0.7
2,999,224 - ECD_02859 0.54 -0.5
2,999,254 - ECD_02859 0.56 -0.4
2,999,293 - ECD_02859 0.59 -0.2
2,999,345 + ECD_02859 0.63 -0.6
2,999,369 + ECD_02859 0.65 +1.3
2,999,369 + ECD_02859 0.65 -0.1
2,999,370 - ECD_02859 0.65 +0.4
2,999,428 - ECD_02859 0.69 -1.1
2,999,466 - ECD_02859 0.72 -1.8
2,999,490 - ECD_02859 0.74 +0.5
2,999,635 + ECD_02859 0.85 +0.7
2,999,831 - -0.1
2,999,869 - +1.0
2,999,889 + -0.1
2,999,890 - -0.3
2,999,964 + ECD_02860 0.10 +0.7
3,000,052 - ECD_02860 0.22 +1.0
3,000,143 + ECD_02860 0.34 -1.2
3,000,143 + ECD_02860 0.34 -0.6
3,000,143 + ECD_02860 0.34 +0.7
3,000,223 - ECD_02860 0.44 +0.1
3,000,223 - ECD_02860 0.44 -0.1
3,000,223 - ECD_02860 0.44 -0.9
3,000,303 - ECD_02860 0.55 +1.0
3,000,303 - ECD_02860 0.55 +1.2
3,000,303 - ECD_02860 0.55 +0.0
3,000,333 + ECD_02860 0.59 -1.8
3,000,333 + ECD_02860 0.59 -0.3
3,000,334 - ECD_02860 0.59 +0.8
3,000,337 + ECD_02860 0.59 +0.3
3,000,337 + ECD_02860 0.59 +1.0
3,000,338 - ECD_02860 0.59 +0.1
3,000,338 - ECD_02860 0.59 +0.3
3,000,338 - ECD_02860 0.59 +0.4
3,000,338 - ECD_02860 0.59 -0.1
3,000,338 - ECD_02860 0.59 +0.1
3,000,338 - ECD_02860 0.59 +0.0
3,000,338 - ECD_02860 0.59 -1.4
3,000,338 - ECD_02860 0.59 +0.3
3,000,353 + ECD_02860 0.61 +0.3
3,000,483 + ECD_02860 0.78 +0.3
3,000,617 - +0.0
3,000,617 - -0.6
3,000,619 + +1.2
3,000,620 - -1.2
3,000,620 - +0.9
3,000,789 - ECD_02861 0.16 +0.0

Or see this region's nucleotide sequence