Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02857 and ECD_02858 are separated by 11 nucleotides ECD_02858 and ECD_02859 overlap by 1 nucleotides ECD_02859 and ECD_02860 are separated by 45 nucleotides ECD_02860 and ECD_02861 are separated by 31 nucleotides
ECD_02857: ECD_02857 - hypothetical protein, at 2,997,097 to 2,997,657
_02857
ECD_02858: ECD_02858 - hypothetical protein, at 2,997,669 to 2,998,493
_02858
ECD_02859: ECD_02859 - putative inner membrane polysaccharide flippase, at 2,998,493 to 2,999,842
_02859
ECD_02860: ECD_02860 - putative ATP-binding protein, at 2,999,888 to 3,000,646
_02860
ECD_02861: ECD_02861 - putative ATP-binding protein, at 3,000,678 to 3,001,391
_02861
Position (kb)
2998
2999
3000 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2997.561 kb on - strand, within ECD_02857 at 2997.639 kb on + strand at 2997.671 kb on - strand at 2997.742 kb on + strand at 2997.743 kb on - strand at 2997.743 kb on - strand at 2997.789 kb on - strand, within ECD_02858 at 2997.829 kb on - strand, within ECD_02858 at 2997.867 kb on + strand, within ECD_02858 at 2998.002 kb on + strand, within ECD_02858 at 2998.011 kb on + strand, within ECD_02858 at 2998.027 kb on - strand, within ECD_02858 at 2998.222 kb on + strand, within ECD_02858 at 2998.222 kb on + strand, within ECD_02858 at 2998.223 kb on - strand, within ECD_02858 at 2998.238 kb on - strand, within ECD_02858 at 2998.355 kb on - strand, within ECD_02858 at 2998.379 kb on + strand, within ECD_02858 at 2998.380 kb on - strand, within ECD_02858 at 2998.387 kb on - strand, within ECD_02858 at 2998.519 kb on - strand at 2998.519 kb on - strand at 2998.550 kb on + strand at 2998.562 kb on + strand at 2998.599 kb on + strand at 2998.659 kb on + strand, within ECD_02859 at 2998.788 kb on + strand, within ECD_02859 at 2998.789 kb on - strand, within ECD_02859 at 2998.801 kb on - strand, within ECD_02859 at 2998.905 kb on - strand, within ECD_02859 at 2998.935 kb on - strand, within ECD_02859 at 2999.138 kb on - strand, within ECD_02859 at 2999.223 kb on + strand, within ECD_02859 at 2999.223 kb on + strand, within ECD_02859 at 2999.223 kb on + strand, within ECD_02859 at 2999.224 kb on - strand, within ECD_02859 at 2999.224 kb on - strand, within ECD_02859 at 2999.224 kb on - strand, within ECD_02859 at 2999.224 kb on - strand, within ECD_02859 at 2999.254 kb on - strand, within ECD_02859 at 2999.293 kb on - strand, within ECD_02859 at 2999.345 kb on + strand, within ECD_02859 at 2999.369 kb on + strand, within ECD_02859 at 2999.369 kb on + strand, within ECD_02859 at 2999.370 kb on - strand, within ECD_02859 at 2999.428 kb on - strand, within ECD_02859 at 2999.466 kb on - strand, within ECD_02859 at 2999.490 kb on - strand, within ECD_02859 at 2999.635 kb on + strand, within ECD_02859 at 2999.831 kb on - strand at 2999.869 kb on - strand at 2999.889 kb on + strand at 2999.890 kb on - strand at 2999.964 kb on + strand, within ECD_02860 at 3000.052 kb on - strand, within ECD_02860 at 3000.143 kb on + strand, within ECD_02860 at 3000.143 kb on + strand, within ECD_02860 at 3000.143 kb on + strand, within ECD_02860 at 3000.223 kb on - strand, within ECD_02860 at 3000.223 kb on - strand, within ECD_02860 at 3000.223 kb on - strand, within ECD_02860 at 3000.303 kb on - strand, within ECD_02860 at 3000.303 kb on - strand, within ECD_02860 at 3000.303 kb on - strand, within ECD_02860 at 3000.333 kb on + strand, within ECD_02860 at 3000.333 kb on + strand, within ECD_02860 at 3000.334 kb on - strand, within ECD_02860 at 3000.337 kb on + strand, within ECD_02860 at 3000.337 kb on + strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.338 kb on - strand, within ECD_02860 at 3000.353 kb on + strand, within ECD_02860 at 3000.483 kb on + strand, within ECD_02860 at 3000.617 kb on - strand at 3000.617 kb on - strand at 3000.619 kb on + strand at 3000.620 kb on - strand at 3000.620 kb on - strand at 3000.789 kb on - strand, within ECD_02861
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,997,561 - ECD_02857 0.83 +0.1 2,997,639 + -0.2 2,997,671 - -0.7 2,997,742 + +1.2 2,997,743 - +1.0 2,997,743 - +0.4 2,997,789 - ECD_02858 0.15 -0.2 2,997,829 - ECD_02858 0.19 -1.7 2,997,867 + ECD_02858 0.24 -0.6 2,998,002 + ECD_02858 0.40 -0.6 2,998,011 + ECD_02858 0.41 -2.0 2,998,027 - ECD_02858 0.43 -1.1 2,998,222 + ECD_02858 0.67 -0.2 2,998,222 + ECD_02858 0.67 -0.3 2,998,223 - ECD_02858 0.67 -0.2 2,998,238 - ECD_02858 0.69 -0.7 2,998,355 - ECD_02858 0.83 -3.0 2,998,379 + ECD_02858 0.86 +0.3 2,998,380 - ECD_02858 0.86 +1.1 2,998,387 - ECD_02858 0.87 -1.0 2,998,519 - +0.8 2,998,519 - -0.3 2,998,550 + -1.6 2,998,562 + -0.5 2,998,599 + +0.1 2,998,659 + ECD_02859 0.12 -0.2 2,998,788 + ECD_02859 0.22 +0.3 2,998,789 - ECD_02859 0.22 +0.3 2,998,801 - ECD_02859 0.23 -1.3 2,998,905 - ECD_02859 0.31 +0.1 2,998,935 - ECD_02859 0.33 +0.6 2,999,138 - ECD_02859 0.48 -0.8 2,999,223 + ECD_02859 0.54 -0.3 2,999,223 + ECD_02859 0.54 -0.1 2,999,223 + ECD_02859 0.54 -1.9 2,999,224 - ECD_02859 0.54 -0.5 2,999,224 - ECD_02859 0.54 +0.2 2,999,224 - ECD_02859 0.54 -0.7 2,999,224 - ECD_02859 0.54 -0.5 2,999,254 - ECD_02859 0.56 -0.4 2,999,293 - ECD_02859 0.59 -0.2 2,999,345 + ECD_02859 0.63 -0.6 2,999,369 + ECD_02859 0.65 +1.3 2,999,369 + ECD_02859 0.65 -0.1 2,999,370 - ECD_02859 0.65 +0.4 2,999,428 - ECD_02859 0.69 -1.1 2,999,466 - ECD_02859 0.72 -1.8 2,999,490 - ECD_02859 0.74 +0.5 2,999,635 + ECD_02859 0.85 +0.7 2,999,831 - -0.1 2,999,869 - +1.0 2,999,889 + -0.1 2,999,890 - -0.3 2,999,964 + ECD_02860 0.10 +0.7 3,000,052 - ECD_02860 0.22 +1.0 3,000,143 + ECD_02860 0.34 -1.2 3,000,143 + ECD_02860 0.34 -0.6 3,000,143 + ECD_02860 0.34 +0.7 3,000,223 - ECD_02860 0.44 +0.1 3,000,223 - ECD_02860 0.44 -0.1 3,000,223 - ECD_02860 0.44 -0.9 3,000,303 - ECD_02860 0.55 +1.0 3,000,303 - ECD_02860 0.55 +1.2 3,000,303 - ECD_02860 0.55 +0.0 3,000,333 + ECD_02860 0.59 -1.8 3,000,333 + ECD_02860 0.59 -0.3 3,000,334 - ECD_02860 0.59 +0.8 3,000,337 + ECD_02860 0.59 +0.3 3,000,337 + ECD_02860 0.59 +1.0 3,000,338 - ECD_02860 0.59 +0.1 3,000,338 - ECD_02860 0.59 +0.3 3,000,338 - ECD_02860 0.59 +0.4 3,000,338 - ECD_02860 0.59 -0.1 3,000,338 - ECD_02860 0.59 +0.1 3,000,338 - ECD_02860 0.59 +0.0 3,000,338 - ECD_02860 0.59 -1.4 3,000,338 - ECD_02860 0.59 +0.3 3,000,353 + ECD_02860 0.61 +0.3 3,000,483 + ECD_02860 0.78 +0.3 3,000,617 - +0.0 3,000,617 - -0.6 3,000,619 + +1.2 3,000,620 - -1.2 3,000,620 - +0.9 3,000,789 - ECD_02861 0.16 +0.0
Or see this region's nucleotide sequence