Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02455 and ECD_02456 are separated by 55 nucleotides ECD_02456 and ECD_04345 are separated by 193 nucleotides ECD_04345 and ECD_04346 overlap by 4 nucleotides ECD_04346 and ECD_02457 are separated by 271 nucleotides
ECD_02455: ECD_02455 - putative DNA-binding transcriptional regulator, at 2,565,358 to 2,566,206
_02455
ECD_02456: ECD_02456 - putative 4Fe-4S cluster-containing protein, at 2,566,262 to 2,566,522
_02456
ECD_04345: ECD_04345 - toxic membrane protein, at 2,566,716 to 2,566,796
_04345
ECD_04346: ECD_04346 - hypothetical protein, at 2,566,793 to 2,566,945
_04346
ECD_02457: ECD_02457 - holo-[acyl-carrier-protein] synthase 1, at 2,567,217 to 2,567,597
_02457
Position (kb)
2566
2567 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2565.369 kb on - strand at 2565.437 kb on + strand at 2565.437 kb on + strand at 2565.536 kb on - strand, within ECD_02455 at 2565.555 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.689 kb on - strand, within ECD_02455 at 2565.689 kb on - strand, within ECD_02455 at 2565.705 kb on + strand, within ECD_02455 at 2565.708 kb on + strand, within ECD_02455 at 2565.855 kb on + strand, within ECD_02455 at 2565.878 kb on + strand, within ECD_02455 at 2566.043 kb on - strand, within ECD_02455 at 2566.044 kb on + strand, within ECD_02455 at 2566.045 kb on - strand, within ECD_02455 at 2566.045 kb on - strand, within ECD_02455 at 2566.261 kb on + strand at 2566.369 kb on + strand, within ECD_02456 at 2566.370 kb on - strand, within ECD_02456 at 2566.436 kb on - strand, within ECD_02456 at 2566.551 kb on + strand at 2566.654 kb on + strand at 2566.841 kb on + strand, within ECD_04346 at 2566.841 kb on + strand, within ECD_04346 at 2566.841 kb on + strand, within ECD_04346 at 2566.992 kb on + strand at 2567.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,565,369 - +0.1 2,565,437 + +1.0 2,565,437 + -0.8 2,565,536 - ECD_02455 0.21 +0.7 2,565,555 + ECD_02455 0.23 -2.5 2,565,688 + ECD_02455 0.39 +0.7 2,565,688 + ECD_02455 0.39 +0.5 2,565,688 + ECD_02455 0.39 -0.2 2,565,688 + ECD_02455 0.39 +0.1 2,565,689 - ECD_02455 0.39 +0.1 2,565,689 - ECD_02455 0.39 +0.6 2,565,705 + ECD_02455 0.41 +0.9 2,565,708 + ECD_02455 0.41 -0.2 2,565,855 + ECD_02455 0.59 -0.3 2,565,878 + ECD_02455 0.61 -0.2 2,566,043 - ECD_02455 0.81 -0.4 2,566,044 + ECD_02455 0.81 +0.5 2,566,045 - ECD_02455 0.81 +0.5 2,566,045 - ECD_02455 0.81 +1.9 2,566,261 + +0.5 2,566,369 + ECD_02456 0.41 -0.2 2,566,370 - ECD_02456 0.41 -1.9 2,566,436 - ECD_02456 0.67 +0.7 2,566,551 + +0.2 2,566,654 + +0.7 2,566,841 + ECD_04346 0.31 +1.4 2,566,841 + ECD_04346 0.31 -0.5 2,566,841 + ECD_04346 0.31 -0.7 2,566,992 + -0.2 2,567,108 + -0.2
Or see this region's nucleotide sequence