Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02430 and ECD_02431 overlap by 4 nucleotides ECD_02431 and ECD_02432 overlap by 1 nucleotides ECD_02432 and ECD_02433 overlap by 4 nucleotides ECD_02433 and ECD_02434 are separated by 9 nucleotides
ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198
_02430
ECD_02431: ECD_02431 - 3-phenylpropionate dioxygenase, small (beta) subunit, at 2,536,195 to 2,536,713
_02431
ECD_02432: ECD_02432 - 3-phenylpropionate dioxygenase, ferredoxin subunit, at 2,536,713 to 2,537,033
_02432
ECD_02433: ECD_02433 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase, at 2,537,030 to 2,537,842
_02433
ECD_02434: ECD_02434 - phenylpropionate dioxygenase, ferredoxin reductase subunit, at 2,537,852 to 2,539,054
_02434
Position (kb)
2537
2538 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2536.072 kb on + strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.220 kb on + strand at 2536.220 kb on + strand at 2536.221 kb on - strand at 2536.488 kb on - strand, within ECD_02431 at 2536.553 kb on + strand, within ECD_02431 at 2536.592 kb on - strand, within ECD_02431 at 2536.659 kb on + strand, within ECD_02431 at 2536.703 kb on + strand at 2536.704 kb on - strand at 2536.725 kb on + strand at 2536.775 kb on + strand, within ECD_02432 at 2536.847 kb on + strand, within ECD_02432 at 2537.189 kb on - strand, within ECD_02433 at 2537.324 kb on - strand, within ECD_02433 at 2537.327 kb on - strand, within ECD_02433 at 2537.327 kb on - strand, within ECD_02433 at 2537.379 kb on + strand, within ECD_02433 at 2537.380 kb on - strand, within ECD_02433 at 2537.380 kb on - strand, within ECD_02433 at 2537.495 kb on + strand, within ECD_02433 at 2537.544 kb on - strand, within ECD_02433 at 2537.590 kb on + strand, within ECD_02433 at 2537.727 kb on - strand, within ECD_02433 at 2537.872 kb on + strand at 2537.975 kb on + strand, within ECD_02434 at 2538.027 kb on + strand, within ECD_02434 at 2538.123 kb on + strand, within ECD_02434 at 2538.129 kb on + strand, within ECD_02434 at 2538.168 kb on + strand, within ECD_02434 at 2538.313 kb on + strand, within ECD_02434 at 2538.314 kb on - strand, within ECD_02434 at 2538.314 kb on - strand, within ECD_02434 at 2538.355 kb on + strand, within ECD_02434 at 2538.356 kb on - strand, within ECD_02434 at 2538.356 kb on - strand, within ECD_02434 at 2538.356 kb on - strand, within ECD_02434 at 2538.422 kb on + strand, within ECD_02434 at 2538.470 kb on - strand, within ECD_02434 at 2538.607 kb on + strand, within ECD_02434 at 2538.708 kb on + strand, within ECD_02434 at 2538.709 kb on - strand, within ECD_02434 at 2538.739 kb on + strand, within ECD_02434 at 2538.771 kb on + strand, within ECD_02434 at 2538.822 kb on - strand, within ECD_02434 at 2538.829 kb on + strand, within ECD_02434 at 2538.829 kb on + strand, within ECD_02434 at 2538.834 kb on + strand, within ECD_02434 at 2538.834 kb on + strand, within ECD_02434 at 2538.841 kb on + strand, within ECD_02434 at 2538.842 kb on - strand, within ECD_02434
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,536,072 + -0.9 2,536,073 - +0.7 2,536,073 - +0.6 2,536,073 - +0.3 2,536,073 - -0.0 2,536,073 - +0.4 2,536,220 + +0.9 2,536,220 + -0.9 2,536,221 - +0.4 2,536,488 - ECD_02431 0.56 +0.2 2,536,553 + ECD_02431 0.69 +0.3 2,536,592 - ECD_02431 0.76 +0.1 2,536,659 + ECD_02431 0.89 +0.5 2,536,703 + -1.8 2,536,704 - +1.1 2,536,725 + +0.4 2,536,775 + ECD_02432 0.19 +0.7 2,536,847 + ECD_02432 0.42 +1.6 2,537,189 - ECD_02433 0.20 +1.1 2,537,324 - ECD_02433 0.36 -0.7 2,537,327 - ECD_02433 0.37 +1.5 2,537,327 - ECD_02433 0.37 -0.1 2,537,379 + ECD_02433 0.43 -0.3 2,537,380 - ECD_02433 0.43 -0.8 2,537,380 - ECD_02433 0.43 +1.3 2,537,495 + ECD_02433 0.57 -0.9 2,537,544 - ECD_02433 0.63 +0.1 2,537,590 + ECD_02433 0.69 -2.2 2,537,727 - ECD_02433 0.86 +0.6 2,537,872 + -0.6 2,537,975 + ECD_02434 0.10 -0.0 2,538,027 + ECD_02434 0.15 +0.1 2,538,123 + ECD_02434 0.23 -2.0 2,538,129 + ECD_02434 0.23 +0.7 2,538,168 + ECD_02434 0.26 +0.6 2,538,313 + ECD_02434 0.38 +0.7 2,538,314 - ECD_02434 0.38 -2.9 2,538,314 - ECD_02434 0.38 +0.4 2,538,355 + ECD_02434 0.42 +0.1 2,538,356 - ECD_02434 0.42 -0.8 2,538,356 - ECD_02434 0.42 +1.1 2,538,356 - ECD_02434 0.42 +0.2 2,538,422 + ECD_02434 0.47 +0.0 2,538,470 - ECD_02434 0.51 +0.7 2,538,607 + ECD_02434 0.63 -0.5 2,538,708 + ECD_02434 0.71 +0.2 2,538,709 - ECD_02434 0.71 +0.5 2,538,739 + ECD_02434 0.74 +0.2 2,538,771 + ECD_02434 0.76 -0.5 2,538,822 - ECD_02434 0.81 -0.1 2,538,829 + ECD_02434 0.81 +0.6 2,538,829 + ECD_02434 0.81 +0.2 2,538,834 + ECD_02434 0.82 -0.5 2,538,834 + ECD_02434 0.82 -0.4 2,538,841 + ECD_02434 0.82 +0.3 2,538,842 - ECD_02434 0.82 +0.7
Or see this region's nucleotide sequence