Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02429 and ECD_02430 are separated by 135 nucleotides ECD_02430 and ECD_02431 overlap by 4 nucleotides ECD_02431 and ECD_02432 overlap by 1 nucleotides ECD_02432 and ECD_02433 overlap by 4 nucleotides
ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701
_02429
ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198
_02430
ECD_02431: ECD_02431 - 3-phenylpropionate dioxygenase, small (beta) subunit, at 2,536,195 to 2,536,713
_02431
ECD_02432: ECD_02432 - 3-phenylpropionate dioxygenase, ferredoxin subunit, at 2,536,713 to 2,537,033
_02432
ECD_02433: ECD_02433 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase, at 2,537,030 to 2,537,842
_02433
Position (kb)
2534
2535
2536
2537 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2533.902 kb on - strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2534.029 kb on + strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.325 kb on - strand, within ECD_02429 at 2534.391 kb on - strand, within ECD_02429 at 2534.607 kb on - strand, within ECD_02429 at 2534.694 kb on - strand at 2534.694 kb on - strand at 2534.809 kb on + strand at 2534.809 kb on + strand at 2534.816 kb on + strand at 2534.837 kb on - strand at 2534.864 kb on + strand at 2534.906 kb on - strand at 2534.906 kb on - strand at 2534.927 kb on + strand at 2534.928 kb on - strand at 2534.967 kb on + strand at 2535.020 kb on + strand, within ECD_02430 at 2535.020 kb on + strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.145 kb on + strand, within ECD_02430 at 2535.145 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.279 kb on - strand, within ECD_02430 at 2535.280 kb on + strand, within ECD_02430 at 2535.280 kb on + strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.507 kb on + strand, within ECD_02430 at 2535.508 kb on - strand, within ECD_02430 at 2535.508 kb on - strand, within ECD_02430 at 2535.635 kb on - strand, within ECD_02430 at 2535.721 kb on - strand, within ECD_02430 at 2535.755 kb on - strand, within ECD_02430 at 2535.760 kb on + strand, within ECD_02430 at 2535.884 kb on - strand, within ECD_02430 at 2536.072 kb on + strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.220 kb on + strand at 2536.220 kb on + strand at 2536.221 kb on - strand at 2536.488 kb on - strand, within ECD_02431 at 2536.553 kb on + strand, within ECD_02431 at 2536.592 kb on - strand, within ECD_02431 at 2536.659 kb on + strand, within ECD_02431 at 2536.703 kb on + strand at 2536.704 kb on - strand at 2536.725 kb on + strand at 2536.775 kb on + strand, within ECD_02432 at 2536.847 kb on + strand, within ECD_02432 at 2537.189 kb on - strand, within ECD_02433
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,533,902 - ECD_02429 0.10 -0.1 2,533,971 + ECD_02429 0.18 +0.8 2,533,971 + ECD_02429 0.18 -0.0 2,534,029 + ECD_02429 0.24 +0.3 2,534,181 - ECD_02429 0.42 +0.1 2,534,181 - ECD_02429 0.42 +0.3 2,534,325 - ECD_02429 0.58 +1.2 2,534,391 - ECD_02429 0.65 +0.2 2,534,607 - ECD_02429 0.89 +2.0 2,534,694 - +0.1 2,534,694 - +0.3 2,534,809 + -0.5 2,534,809 + -0.0 2,534,816 + -0.6 2,534,837 - -0.5 2,534,864 + -0.9 2,534,906 - +0.4 2,534,906 - -0.7 2,534,927 + +0.3 2,534,928 - +0.2 2,534,967 + +0.9 2,535,020 + ECD_02430 0.13 -1.1 2,535,020 + ECD_02430 0.13 +0.3 2,535,021 - ECD_02430 0.14 +0.8 2,535,021 - ECD_02430 0.14 -0.2 2,535,021 - ECD_02430 0.14 +0.5 2,535,145 + ECD_02430 0.23 +0.7 2,535,145 + ECD_02430 0.23 +0.1 2,535,278 + ECD_02430 0.32 -0.2 2,535,278 + ECD_02430 0.32 -1.7 2,535,278 + ECD_02430 0.32 -0.6 2,535,279 - ECD_02430 0.32 -0.0 2,535,280 + ECD_02430 0.33 -0.7 2,535,280 + ECD_02430 0.33 -2.7 2,535,281 - ECD_02430 0.33 +0.6 2,535,281 - ECD_02430 0.33 -1.8 2,535,281 - ECD_02430 0.33 -0.4 2,535,507 + ECD_02430 0.49 -0.0 2,535,508 - ECD_02430 0.49 +0.0 2,535,508 - ECD_02430 0.49 -0.8 2,535,635 - ECD_02430 0.59 -0.6 2,535,721 - ECD_02430 0.65 +1.4 2,535,755 - ECD_02430 0.67 -1.5 2,535,760 + ECD_02430 0.68 +0.0 2,535,884 - ECD_02430 0.77 -0.3 2,536,072 + -0.9 2,536,073 - +0.7 2,536,073 - +0.6 2,536,073 - +0.3 2,536,073 - -0.0 2,536,073 - +0.4 2,536,220 + +0.9 2,536,220 + -0.9 2,536,221 - +0.4 2,536,488 - ECD_02431 0.56 +0.2 2,536,553 + ECD_02431 0.69 +0.3 2,536,592 - ECD_02431 0.76 +0.1 2,536,659 + ECD_02431 0.89 +0.5 2,536,703 + -1.8 2,536,704 - +1.1 2,536,725 + +0.4 2,536,775 + ECD_02432 0.19 +0.7 2,536,847 + ECD_02432 0.42 +1.6 2,537,189 - ECD_02433 0.20 +1.1
Or see this region's nucleotide sequence