Strain Fitness in Escherichia coli BL21 around ECD_02430

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02429 and ECD_02430 are separated by 135 nucleotidesECD_02430 and ECD_02431 overlap by 4 nucleotidesECD_02431 and ECD_02432 overlap by 1 nucleotidesECD_02432 and ECD_02433 overlap by 4 nucleotides ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701 _02429 ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198 _02430 ECD_02431: ECD_02431 - 3-phenylpropionate dioxygenase, small (beta) subunit, at 2,536,195 to 2,536,713 _02431 ECD_02432: ECD_02432 - 3-phenylpropionate dioxygenase, ferredoxin subunit, at 2,536,713 to 2,537,033 _02432 ECD_02433: ECD_02433 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase, at 2,537,030 to 2,537,842 _02433 Position (kb) 2534 2535 2536 2537Strain fitness (log2 ratio) -2 -1 0 1 2at 2533.902 kb on - strand, within ECD_02429at 2533.971 kb on + strand, within ECD_02429at 2533.971 kb on + strand, within ECD_02429at 2534.029 kb on + strand, within ECD_02429at 2534.181 kb on - strand, within ECD_02429at 2534.181 kb on - strand, within ECD_02429at 2534.325 kb on - strand, within ECD_02429at 2534.391 kb on - strand, within ECD_02429at 2534.607 kb on - strand, within ECD_02429at 2534.694 kb on - strandat 2534.694 kb on - strandat 2534.809 kb on + strandat 2534.809 kb on + strandat 2534.816 kb on + strandat 2534.837 kb on - strandat 2534.864 kb on + strandat 2534.906 kb on - strandat 2534.906 kb on - strandat 2534.927 kb on + strandat 2534.928 kb on - strandat 2534.967 kb on + strandat 2535.020 kb on + strand, within ECD_02430at 2535.020 kb on + strand, within ECD_02430at 2535.021 kb on - strand, within ECD_02430at 2535.021 kb on - strand, within ECD_02430at 2535.021 kb on - strand, within ECD_02430at 2535.145 kb on + strand, within ECD_02430at 2535.145 kb on + strand, within ECD_02430at 2535.278 kb on + strand, within ECD_02430at 2535.278 kb on + strand, within ECD_02430at 2535.278 kb on + strand, within ECD_02430at 2535.279 kb on - strand, within ECD_02430at 2535.280 kb on + strand, within ECD_02430at 2535.280 kb on + strand, within ECD_02430at 2535.281 kb on - strand, within ECD_02430at 2535.281 kb on - strand, within ECD_02430at 2535.281 kb on - strand, within ECD_02430at 2535.507 kb on + strand, within ECD_02430at 2535.508 kb on - strand, within ECD_02430at 2535.508 kb on - strand, within ECD_02430at 2535.635 kb on - strand, within ECD_02430at 2535.721 kb on - strand, within ECD_02430at 2535.755 kb on - strand, within ECD_02430at 2535.760 kb on + strand, within ECD_02430at 2535.884 kb on - strand, within ECD_02430at 2536.072 kb on + strandat 2536.073 kb on - strandat 2536.073 kb on - strandat 2536.073 kb on - strandat 2536.073 kb on - strandat 2536.073 kb on - strandat 2536.220 kb on + strandat 2536.220 kb on + strandat 2536.221 kb on - strandat 2536.488 kb on - strand, within ECD_02431at 2536.553 kb on + strand, within ECD_02431at 2536.592 kb on - strand, within ECD_02431at 2536.659 kb on + strand, within ECD_02431at 2536.703 kb on + strandat 2536.704 kb on - strandat 2536.725 kb on + strandat 2536.775 kb on + strand, within ECD_02432at 2536.847 kb on + strand, within ECD_02432at 2537.189 kb on - strand, within ECD_02433

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,533,902 - ECD_02429 0.10 -0.1
2,533,971 + ECD_02429 0.18 +0.8
2,533,971 + ECD_02429 0.18 -0.0
2,534,029 + ECD_02429 0.24 +0.3
2,534,181 - ECD_02429 0.42 +0.1
2,534,181 - ECD_02429 0.42 +0.3
2,534,325 - ECD_02429 0.58 +1.2
2,534,391 - ECD_02429 0.65 +0.2
2,534,607 - ECD_02429 0.89 +2.0
2,534,694 - +0.1
2,534,694 - +0.3
2,534,809 + -0.5
2,534,809 + -0.0
2,534,816 + -0.6
2,534,837 - -0.5
2,534,864 + -0.9
2,534,906 - +0.4
2,534,906 - -0.7
2,534,927 + +0.3
2,534,928 - +0.2
2,534,967 + +0.9
2,535,020 + ECD_02430 0.13 -1.1
2,535,020 + ECD_02430 0.13 +0.3
2,535,021 - ECD_02430 0.14 +0.8
2,535,021 - ECD_02430 0.14 -0.2
2,535,021 - ECD_02430 0.14 +0.5
2,535,145 + ECD_02430 0.23 +0.7
2,535,145 + ECD_02430 0.23 +0.1
2,535,278 + ECD_02430 0.32 -0.2
2,535,278 + ECD_02430 0.32 -1.7
2,535,278 + ECD_02430 0.32 -0.6
2,535,279 - ECD_02430 0.32 -0.0
2,535,280 + ECD_02430 0.33 -0.7
2,535,280 + ECD_02430 0.33 -2.7
2,535,281 - ECD_02430 0.33 +0.6
2,535,281 - ECD_02430 0.33 -1.8
2,535,281 - ECD_02430 0.33 -0.4
2,535,507 + ECD_02430 0.49 -0.0
2,535,508 - ECD_02430 0.49 +0.0
2,535,508 - ECD_02430 0.49 -0.8
2,535,635 - ECD_02430 0.59 -0.6
2,535,721 - ECD_02430 0.65 +1.4
2,535,755 - ECD_02430 0.67 -1.5
2,535,760 + ECD_02430 0.68 +0.0
2,535,884 - ECD_02430 0.77 -0.3
2,536,072 + -0.9
2,536,073 - +0.7
2,536,073 - +0.6
2,536,073 - +0.3
2,536,073 - -0.0
2,536,073 - +0.4
2,536,220 + +0.9
2,536,220 + -0.9
2,536,221 - +0.4
2,536,488 - ECD_02431 0.56 +0.2
2,536,553 + ECD_02431 0.69 +0.3
2,536,592 - ECD_02431 0.76 +0.1
2,536,659 + ECD_02431 0.89 +0.5
2,536,703 + -1.8
2,536,704 - +1.1
2,536,725 + +0.4
2,536,775 + ECD_02432 0.19 +0.7
2,536,847 + ECD_02432 0.42 +1.6
2,537,189 - ECD_02433 0.20 +1.1

Or see this region's nucleotide sequence