Strain Fitness in Escherichia coli BL21 around ECD_02289

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02288 and ECD_04338 are separated by 310 nucleotidesECD_04338 and ECD_02289 are separated by 64 nucleotidesECD_02289 and ECD_02290 are separated by 376 nucleotides ECD_02288: ECD_02288 - palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 2,373,530 to 2,374,450 _02288 ECD_04338: ECD_04338 - inner membrane protein, at 2,374,761 to 2,374,877 _04338 ECD_02289: ECD_02289 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,374,942 to 2,376,180 _02289 ECD_02290: ECD_02290 - sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system, at 2,376,557 to 2,378,254 _02290 Position (kb) 2374 2375 2376 2377Strain fitness (log2 ratio) -2 -1 0 1 2at 2373.982 kb on + strand, within ECD_02288at 2373.986 kb on + strand, within ECD_02288at 2373.987 kb on - strand, within ECD_02288at 2374.000 kb on + strand, within ECD_02288at 2374.069 kb on + strand, within ECD_02288at 2374.136 kb on + strand, within ECD_02288at 2374.205 kb on + strand, within ECD_02288at 2374.448 kb on + strandat 2374.448 kb on + strandat 2374.648 kb on + strandat 2374.719 kb on + strandat 2374.759 kb on + strandat 2374.760 kb on - strandat 2374.785 kb on - strand, within ECD_04338at 2374.963 kb on - strandat 2374.963 kb on - strandat 2375.011 kb on - strandat 2375.169 kb on - strand, within ECD_02289at 2375.255 kb on - strand, within ECD_02289at 2375.274 kb on - strand, within ECD_02289at 2375.376 kb on + strand, within ECD_02289at 2375.416 kb on - strand, within ECD_02289at 2375.503 kb on - strand, within ECD_02289at 2375.529 kb on - strand, within ECD_02289at 2375.776 kb on - strand, within ECD_02289at 2375.776 kb on - strand, within ECD_02289at 2375.776 kb on - strand, within ECD_02289at 2376.022 kb on - strand, within ECD_02289at 2376.118 kb on - strandat 2376.437 kb on - strandat 2376.527 kb on + strandat 2376.528 kb on - strandat 2376.614 kb on - strandat 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.775 kb on - strand, within ECD_02290at 2376.778 kb on + strand, within ECD_02290at 2376.779 kb on - strand, within ECD_02290at 2376.779 kb on - strand, within ECD_02290at 2376.925 kb on + strand, within ECD_02290at 2377.069 kb on + strand, within ECD_02290at 2377.115 kb on - strand, within ECD_02290

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,373,982 + ECD_02288 0.49 +0.5
2,373,986 + ECD_02288 0.50 +2.3
2,373,987 - ECD_02288 0.50 -0.1
2,374,000 + ECD_02288 0.51 +0.3
2,374,069 + ECD_02288 0.59 +0.2
2,374,136 + ECD_02288 0.66 +0.0
2,374,205 + ECD_02288 0.73 +0.8
2,374,448 + -0.3
2,374,448 + +0.2
2,374,648 + +0.3
2,374,719 + +0.4
2,374,759 + +0.6
2,374,760 - +0.6
2,374,785 - ECD_04338 0.21 +0.1
2,374,963 - -2.5
2,374,963 - +1.4
2,375,011 - -0.5
2,375,169 - ECD_02289 0.18 +0.1
2,375,255 - ECD_02289 0.25 +0.8
2,375,274 - ECD_02289 0.27 -0.1
2,375,376 + ECD_02289 0.35 +0.0
2,375,416 - ECD_02289 0.38 +0.2
2,375,503 - ECD_02289 0.45 +0.5
2,375,529 - ECD_02289 0.47 +1.9
2,375,776 - ECD_02289 0.67 +0.6
2,375,776 - ECD_02289 0.67 +0.6
2,375,776 - ECD_02289 0.67 -0.1
2,376,022 - ECD_02289 0.87 +1.6
2,376,118 - -0.0
2,376,437 - +0.6
2,376,527 + -0.0
2,376,528 - +0.4
2,376,614 - -0.3
2,376,775 - ECD_02290 0.13 +0.0
2,376,775 - ECD_02290 0.13 +0.1
2,376,775 - ECD_02290 0.13 +0.6
2,376,775 - ECD_02290 0.13 -0.5
2,376,775 - ECD_02290 0.13 -1.2
2,376,778 + ECD_02290 0.13 +0.5
2,376,779 - ECD_02290 0.13 -0.3
2,376,779 - ECD_02290 0.13 -0.0
2,376,925 + ECD_02290 0.22 +0.2
2,377,069 + ECD_02290 0.30 +0.7
2,377,115 - ECD_02290 0.33 +0.4

Or see this region's nucleotide sequence