Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02189 and ECD_02190 are separated by 14 nucleotides ECD_02190 and ECD_02191 overlap by 4 nucleotides ECD_02191 and ECD_02192 are separated by 88 nucleotides
ECD_02189: ECD_02189 - dihydroxynaphthoic acid synthetase, at 2,266,136 to 2,266,993
_02189
ECD_02190: ECD_02190 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,267,008 to 2,267,766
_02190
ECD_02191: ECD_02191 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase, at 2,267,763 to 2,269,433
_02191
ECD_02192: ECD_02192 - isochorismate synthase 2, at 2,269,522 to 2,270,817
_02192
Position (kb)
2267
2268
2269
2270 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2267.195 kb on - strand, within ECD_02190 at 2267.559 kb on + strand, within ECD_02190 at 2267.598 kb on + strand, within ECD_02190 at 2267.636 kb on + strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.767 kb on - strand at 2268.095 kb on - strand, within ECD_02191 at 2268.206 kb on - strand, within ECD_02191 at 2268.267 kb on - strand, within ECD_02191 at 2268.446 kb on + strand, within ECD_02191 at 2268.884 kb on + strand, within ECD_02191 at 2268.885 kb on - strand, within ECD_02191 at 2268.885 kb on - strand, within ECD_02191 at 2268.911 kb on - strand, within ECD_02191 at 2269.102 kb on - strand, within ECD_02191 at 2269.331 kb on + strand at 2269.416 kb on - strand at 2269.426 kb on - strand at 2269.426 kb on - strand at 2269.461 kb on + strand at 2269.466 kb on - strand at 2269.468 kb on - strand at 2269.468 kb on - strand at 2269.484 kb on - strand at 2269.624 kb on + strand at 2269.624 kb on + strand at 2269.624 kb on + strand at 2269.811 kb on - strand, within ECD_02192 at 2269.931 kb on - strand, within ECD_02192 at 2270.006 kb on - strand, within ECD_02192 at 2270.035 kb on - strand, within ECD_02192
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,267,195 - ECD_02190 0.25 +0.0 2,267,559 + ECD_02190 0.73 +1.3 2,267,598 + ECD_02190 0.78 -0.4 2,267,636 + ECD_02190 0.83 +0.7 2,267,637 - ECD_02190 0.83 -0.0 2,267,637 - ECD_02190 0.83 +0.4 2,267,637 - ECD_02190 0.83 -0.2 2,267,637 - ECD_02190 0.83 +0.0 2,267,767 - +1.2 2,268,095 - ECD_02191 0.20 +0.3 2,268,206 - ECD_02191 0.27 -1.1 2,268,267 - ECD_02191 0.30 +1.4 2,268,446 + ECD_02191 0.41 +0.6 2,268,884 + ECD_02191 0.67 +0.7 2,268,885 - ECD_02191 0.67 +0.4 2,268,885 - ECD_02191 0.67 +0.2 2,268,911 - ECD_02191 0.69 -0.2 2,269,102 - ECD_02191 0.80 -0.0 2,269,331 + -1.9 2,269,416 - +0.5 2,269,426 - +2.0 2,269,426 - +0.2 2,269,461 + -0.9 2,269,466 - -1.0 2,269,468 - +0.1 2,269,468 - +0.5 2,269,484 - -0.5 2,269,624 + -0.3 2,269,624 + +0.8 2,269,624 + +0.9 2,269,811 - ECD_02192 0.22 -1.0 2,269,931 - ECD_02192 0.32 +0.2 2,270,006 - ECD_02192 0.37 -1.2 2,270,035 - ECD_02192 0.40 -1.1
Or see this region's nucleotide sequence