Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02181 and ECD_02182 overlap by 4 nucleotides ECD_02182 and ECD_02183 overlap by 1 nucleotides ECD_02183 and ECD_02184 overlap by 4 nucleotides ECD_02184 and ECD_02185 overlap by 1 nucleotides ECD_02185 and ECD_02186 overlap by 7 nucleotides
ECD_02181: ECD_02181 - fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase, at 2,258,213 to 2,260,195
_02181
ECD_02182: ECD_02182 - undecaprenyl phosphate-alpha-L-ara4FN deformylase, at 2,260,192 to 2,261,082
_02182
ECD_02183: ECD_02183 - 4-amino-4-deoxy-L-arabinose transferase, at 2,261,082 to 2,262,734
_02183
ECD_02184: ECD_02184 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,262,731 to 2,263,066
_02184
ECD_02185: ECD_02185 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,263,066 to 2,263,452
_02185
ECD_02186: ECD_02186 - inactive two-component system connector protein, at 2,263,446 to 2,263,712
_02186
Position (kb)
2261
2262
2263 Strain fitness (log2 ratio)
-2
-1
0
1 at 2260.177 kb on + strand at 2260.208 kb on + strand at 2260.208 kb on + strand at 2260.281 kb on + strand, within ECD_02182 at 2260.281 kb on + strand, within ECD_02182 at 2260.281 kb on + strand, within ECD_02182 at 2260.410 kb on + strand, within ECD_02182 at 2260.425 kb on + strand, within ECD_02182 at 2260.920 kb on + strand, within ECD_02182 at 2261.097 kb on + strand at 2261.097 kb on + strand at 2261.130 kb on + strand at 2261.130 kb on + strand at 2261.130 kb on + strand at 2261.131 kb on - strand at 2261.133 kb on + strand at 2261.140 kb on + strand at 2261.248 kb on + strand, within ECD_02183 at 2261.285 kb on + strand, within ECD_02183 at 2261.436 kb on + strand, within ECD_02183 at 2261.457 kb on + strand, within ECD_02183 at 2261.472 kb on + strand, within ECD_02183 at 2261.647 kb on + strand, within ECD_02183 at 2261.859 kb on + strand, within ECD_02183 at 2261.859 kb on + strand, within ECD_02183 at 2261.859 kb on + strand, within ECD_02183 at 2262.026 kb on + strand, within ECD_02183 at 2262.069 kb on + strand, within ECD_02183 at 2262.069 kb on + strand, within ECD_02183 at 2262.113 kb on + strand, within ECD_02183 at 2262.152 kb on + strand, within ECD_02183 at 2262.219 kb on + strand, within ECD_02183 at 2262.273 kb on + strand, within ECD_02183 at 2262.368 kb on + strand, within ECD_02183 at 2262.434 kb on + strand, within ECD_02183 at 2262.434 kb on + strand, within ECD_02183 at 2262.434 kb on + strand, within ECD_02183 at 2262.434 kb on + strand, within ECD_02183 at 2262.434 kb on + strand, within ECD_02183 at 2262.434 kb on + strand, within ECD_02183 at 2262.504 kb on + strand, within ECD_02183 at 2262.536 kb on + strand, within ECD_02183 at 2262.536 kb on + strand, within ECD_02183 at 2262.593 kb on + strand at 2262.593 kb on + strand at 2262.593 kb on + strand at 2262.653 kb on + strand at 2262.653 kb on + strand at 2263.499 kb on - strand, within ECD_02186 at 2263.548 kb on - strand, within ECD_02186 at 2263.656 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.660 kb on - strand, within ECD_02186 at 2263.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,260,177 + -0.1 2,260,208 + +0.6 2,260,208 + -1.2 2,260,281 + ECD_02182 0.10 -1.4 2,260,281 + ECD_02182 0.10 +0.3 2,260,281 + ECD_02182 0.10 -1.4 2,260,410 + ECD_02182 0.24 +0.2 2,260,425 + ECD_02182 0.26 +0.3 2,260,920 + ECD_02182 0.82 -0.0 2,261,097 + -0.0 2,261,097 + +0.1 2,261,130 + +0.2 2,261,130 + +0.2 2,261,130 + -1.2 2,261,131 - -0.0 2,261,133 + +0.3 2,261,140 + +0.7 2,261,248 + ECD_02183 0.10 +0.2 2,261,285 + ECD_02183 0.12 -0.5 2,261,436 + ECD_02183 0.21 +0.6 2,261,457 + ECD_02183 0.23 +0.2 2,261,472 + ECD_02183 0.24 -0.1 2,261,647 + ECD_02183 0.34 +1.0 2,261,859 + ECD_02183 0.47 +0.2 2,261,859 + ECD_02183 0.47 +0.3 2,261,859 + ECD_02183 0.47 -0.3 2,262,026 + ECD_02183 0.57 +0.2 2,262,069 + ECD_02183 0.60 -0.7 2,262,069 + ECD_02183 0.60 -0.1 2,262,113 + ECD_02183 0.62 -2.0 2,262,152 + ECD_02183 0.65 +0.8 2,262,219 + ECD_02183 0.69 +0.1 2,262,273 + ECD_02183 0.72 -0.6 2,262,368 + ECD_02183 0.78 -0.4 2,262,434 + ECD_02183 0.82 +0.3 2,262,434 + ECD_02183 0.82 +0.5 2,262,434 + ECD_02183 0.82 -0.0 2,262,434 + ECD_02183 0.82 +0.5 2,262,434 + ECD_02183 0.82 +0.7 2,262,434 + ECD_02183 0.82 +1.2 2,262,504 + ECD_02183 0.86 +0.3 2,262,536 + ECD_02183 0.88 +0.6 2,262,536 + ECD_02183 0.88 +0.6 2,262,593 + -1.3 2,262,593 + +0.7 2,262,593 + +0.6 2,262,653 + +0.1 2,262,653 + +0.3 2,263,499 - ECD_02186 0.20 -1.0 2,263,548 - ECD_02186 0.38 +0.2 2,263,656 - ECD_02186 0.79 -0.1 2,263,660 - ECD_02186 0.80 -2.3 2,263,660 - ECD_02186 0.80 +0.9 2,263,660 - ECD_02186 0.80 -0.3 2,263,660 - ECD_02186 0.80 -0.8 2,263,660 - ECD_02186 0.80 +0.2 2,263,660 - ECD_02186 0.80 +0.8 2,263,660 - ECD_02186 0.80 +0.4 2,263,719 - -0.3
Or see this region's nucleotide sequence