Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02070 and ECD_02071 overlap by 4 nucleotides ECD_02071 and ECD_02072 are separated by 129 nucleotides ECD_02072 and ECD_02073 are separated by 149 nucleotides ECD_02073 and ECD_02074 are separated by 2 nucleotides
ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926
_02070
ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618
_02071
ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632
_02072
ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501
_02073
ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743
_02074
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2125.880 kb on + strand, within ECD_02070 at 2126.085 kb on + strand, within ECD_02071 at 2126.153 kb on - strand, within ECD_02071 at 2126.155 kb on - strand, within ECD_02071 at 2126.164 kb on + strand, within ECD_02071 at 2126.412 kb on - strand, within ECD_02071 at 2126.432 kb on + strand, within ECD_02071 at 2126.438 kb on + strand, within ECD_02071 at 2126.531 kb on + strand, within ECD_02071 at 2126.532 kb on - strand, within ECD_02071 at 2126.649 kb on - strand at 2126.649 kb on - strand at 2126.689 kb on + strand at 2126.691 kb on + strand at 2126.734 kb on + strand at 2126.814 kb on - strand at 2126.829 kb on + strand at 2127.119 kb on + strand, within ECD_02072 at 2127.226 kb on - strand, within ECD_02072 at 2127.263 kb on + strand, within ECD_02072 at 2127.363 kb on + strand, within ECD_02072 at 2127.364 kb on - strand, within ECD_02072 at 2127.364 kb on - strand, within ECD_02072 at 2127.369 kb on - strand, within ECD_02072 at 2127.410 kb on + strand, within ECD_02072 at 2127.501 kb on + strand, within ECD_02072 at 2127.630 kb on + strand at 2127.810 kb on + strand at 2127.882 kb on - strand, within ECD_02073 at 2127.882 kb on - strand, within ECD_02073 at 2127.883 kb on + strand, within ECD_02073 at 2127.884 kb on - strand, within ECD_02073 at 2127.884 kb on - strand, within ECD_02073 at 2127.975 kb on - strand, within ECD_02073 at 2128.010 kb on + strand, within ECD_02073 at 2128.035 kb on + strand, within ECD_02073 at 2128.315 kb on - strand, within ECD_02073
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,125,880 + ECD_02070 0.88 -0.7 2,126,085 + ECD_02071 0.23 +0.6 2,126,153 - ECD_02071 0.33 -0.1 2,126,155 - ECD_02071 0.33 -0.1 2,126,164 + ECD_02071 0.35 -0.4 2,126,412 - ECD_02071 0.70 -1.8 2,126,432 + ECD_02071 0.73 +0.1 2,126,438 + ECD_02071 0.74 +1.1 2,126,531 + ECD_02071 0.87 +0.5 2,126,532 - ECD_02071 0.88 +0.6 2,126,649 - +0.2 2,126,649 - -1.3 2,126,689 + +1.9 2,126,691 + -0.5 2,126,734 + +0.0 2,126,814 - -0.6 2,126,829 + +1.9 2,127,119 + ECD_02072 0.42 -0.1 2,127,226 - ECD_02072 0.54 +0.3 2,127,263 + ECD_02072 0.58 +2.3 2,127,363 + ECD_02072 0.69 -0.0 2,127,364 - ECD_02072 0.70 +0.6 2,127,364 - ECD_02072 0.70 +0.0 2,127,369 - ECD_02072 0.70 -1.1 2,127,410 + ECD_02072 0.75 +0.1 2,127,501 + ECD_02072 0.85 -0.8 2,127,630 + -0.6 2,127,810 + -1.1 2,127,882 - ECD_02073 0.14 -1.5 2,127,882 - ECD_02073 0.14 +1.4 2,127,883 + ECD_02073 0.14 -0.6 2,127,884 - ECD_02073 0.14 -1.1 2,127,884 - ECD_02073 0.14 +0.3 2,127,975 - ECD_02073 0.27 +2.5 2,128,010 + ECD_02073 0.32 -1.1 2,128,035 + ECD_02073 0.35 +1.2 2,128,315 - ECD_02073 0.74 +0.1
Or see this region's nucleotide sequence