Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02055 and ECD_02056 are separated by 221 nucleotides ECD_02056 and ECD_02057 are separated by 59 nucleotides ECD_02057 and ECD_02058 overlap by 20 nucleotides ECD_02058 and ECD_02059 are separated by 4 nucleotides
ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507
_02055
ECD_02056: ECD_02056 - transcriptional activator of csgD and csgBA, at 2,109,729 to 2,110,460
_02056
ECD_02057: ECD_02057 - putative membrane protein, at 2,110,520 to 2,110,627
_02057
ECD_02058: ECD_02058 - putative ABC transporter permease, at 2,110,608 to 2,111,339
_02058
ECD_02059: ECD_02059 - putative ABC transporter ATPase, at 2,111,344 to 2,112,270
_02059
Position (kb)
2109
2110
2111 Strain fitness (log2 ratio)
-1
0
1 at 2108.931 kb on + strand, within ECD_02055 at 2109.014 kb on + strand, within ECD_02055 at 2109.217 kb on + strand, within ECD_02055 at 2109.218 kb on - strand, within ECD_02055 at 2109.218 kb on - strand, within ECD_02055 at 2109.298 kb on - strand, within ECD_02055 at 2109.307 kb on - strand, within ECD_02055 at 2109.369 kb on - strand at 2109.643 kb on + strand at 2109.773 kb on + strand at 2110.000 kb on - strand, within ECD_02056 at 2110.091 kb on + strand, within ECD_02056 at 2110.173 kb on + strand, within ECD_02056 at 2110.174 kb on - strand, within ECD_02056 at 2110.250 kb on + strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056 at 2110.519 kb on + strand at 2110.527 kb on + strand at 2110.528 kb on - strand at 2110.603 kb on + strand, within ECD_02057 at 2110.609 kb on + strand at 2110.706 kb on - strand, within ECD_02058 at 2110.849 kb on - strand, within ECD_02058 at 2111.073 kb on - strand, within ECD_02058
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,108,931 + ECD_02055 0.66 +0.6 2,109,014 + ECD_02055 0.71 +0.7 2,109,217 + ECD_02055 0.83 -0.2 2,109,218 - ECD_02055 0.83 +0.2 2,109,218 - ECD_02055 0.83 -1.6 2,109,298 - ECD_02055 0.88 +0.9 2,109,307 - ECD_02055 0.88 +0.2 2,109,369 - -0.4 2,109,643 + +0.2 2,109,773 + +0.8 2,110,000 - ECD_02056 0.37 -0.7 2,110,091 + ECD_02056 0.49 +0.9 2,110,173 + ECD_02056 0.61 -0.9 2,110,174 - ECD_02056 0.61 -0.1 2,110,250 + ECD_02056 0.71 -0.9 2,110,359 - ECD_02056 0.86 +0.3 2,110,359 - ECD_02056 0.86 +0.6 2,110,519 + +0.1 2,110,527 + -0.2 2,110,528 - -0.3 2,110,603 + ECD_02057 0.77 +0.4 2,110,609 + -0.5 2,110,706 - ECD_02058 0.13 -0.3 2,110,849 - ECD_02058 0.33 -0.7 2,111,073 - ECD_02058 0.64 +0.0
Or see this region's nucleotide sequence