Strain Fitness in Escherichia coli BL21 around ECD_01732

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01731 and ECD_01732 are separated by 127 nucleotidesECD_01732 and ECD_01733 are separated by 4 nucleotides ECD_01731: ECD_01731 - inner membrane protein, at 1,788,207 to 1,789,247 _01731 ECD_01732: ECD_01732 - DNA topoisomerase III, at 1,789,375 to 1,791,336 _01732 ECD_01733: ECD_01733 - selenophosphate synthase, at 1,791,341 to 1,792,384 _01733 Position (kb) 1789 1790 1791 1792Strain fitness (log2 ratio) -2 -1 0 1at 1789.540 kb on + strandat 1789.541 kb on - strandat 1790.234 kb on - strand, within ECD_01732at 1790.234 kb on - strand, within ECD_01732at 1790.236 kb on - strand, within ECD_01732at 1790.246 kb on - strand, within ECD_01732at 1790.246 kb on - strand, within ECD_01732at 1790.530 kb on - strand, within ECD_01732at 1790.798 kb on + strand, within ECD_01732at 1790.799 kb on - strand, within ECD_01732at 1790.812 kb on - strand, within ECD_01732at 1791.081 kb on + strand, within ECD_01732at 1791.113 kb on - strand, within ECD_01732at 1791.325 kb on - strandat 1791.557 kb on - strand, within ECD_01733at 1791.830 kb on - strand, within ECD_01733at 1792.006 kb on - strand, within ECD_01733at 1792.006 kb on - strand, within ECD_01733at 1792.006 kb on - strand, within ECD_01733

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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1,789,540 + +1.6
1,789,541 - +0.1
1,790,234 - ECD_01732 0.44 -1.2
1,790,234 - ECD_01732 0.44 -0.4
1,790,236 - ECD_01732 0.44 +0.3
1,790,246 - ECD_01732 0.44 -0.3
1,790,246 - ECD_01732 0.44 -2.3
1,790,530 - ECD_01732 0.59 -0.6
1,790,798 + ECD_01732 0.73 +0.0
1,790,799 - ECD_01732 0.73 +0.2
1,790,812 - ECD_01732 0.73 -1.1
1,791,081 + ECD_01732 0.87 +0.3
1,791,113 - ECD_01732 0.89 -0.2
1,791,325 - +0.5
1,791,557 - ECD_01733 0.21 -0.3
1,791,830 - ECD_01733 0.47 +1.1
1,792,006 - ECD_01733 0.64 +0.8
1,792,006 - ECD_01733 0.64 -0.0
1,792,006 - ECD_01733 0.64 -1.1

Or see this region's nucleotide sequence